Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00240 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTACGGAACTACACTAAGTTTCGTATTGCTTCAGAGCCTCCAGATAGACCATCAAGTGGGTCACTTTTTCTTTTTGACCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTCAAGGGTAATAGAACCAATGTTGGAGCTGTCGTTGAGACTGATGAGGTTTCAACAAGTTCACAGAAGAGCAGTACTAAAAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGACTCCCCCAGTCCGACTAGCACTTTGACATCATTTTGTGAAGATGCTGATAATGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAACCAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCCTCTTCCAACAACGTTGAAGGTTGGTCATCAGTTCCTGCTGTGGATTATGTAGCACAAGTCCAGAAAGATGGACTTGGGGGTAACAGTGGTGATACTAGTATGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCATCAATGTACAACTGGATATCAAACTGTACCTTCTCATGTTTTAACCTCTTCAATTGAACCTCTGTCTTCTGGAATTGTCATTGGACAAGAGAATTCAACTCCTGACAAGATTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAATTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAACACTTTGTCCTTTTCAAAAGAGCACGTTGATCATTTTCCAGATTTGTATTCAGTTTGTGACATAGATAGCAGGTTAACTGCGCAAAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTGTGCTCATCCTGGCAAACAGAATGAGGAGATTTTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATCATATCCAGCTATGAGGTTGAGTTCTGACAATGATATGCCTAAAGAAGGTACCATCAGCTATTCTCTGACTTTGAAACAATCATTAATAGATGGGGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGACCACTGTAGAATGTGGTGATATGGTTGATGATTCGTCATTAAGCCCTTCTATTTCTGAAGACCAGCTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACAGTTACAGATTTAGAAACTGAGGTTGTGGTTATAGGGAGGTTTCTGGGGAACAATAATGGCACAAACTGCCACTGGTCATGTATGTTTGGGGAAGTTGAGGTCCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCATGCACCACCACATAGTGTTGGGCGAGTCCCCTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCGGGCTCTGCGCAAGATGTAGATGTTACCGATATATACACTGCTGGTGCTACAGAAGAATTACGTATGCATTTACGATTTGAGAGGTTATTGTCCCTTGAACCTTCAGATCCTTCAAATGACCTCTCTGAAGGTGCTTTGGAGAAGCAAAACTTAATCAGAGAGCTTATCACAATAAAGGAAGAAGATGATAGTTATGGGGAAGATCCAAATCCTCAGAATGATCAAATTCAGCATCAAAGCAAGGAGTTCCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTTATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATCAACTTTCGGGATATTAATGGATGGACTGCTCTTCATTGGGCAGCATTATGTGGCAGGGAGTTGACAGTTGTAACCCTTATAACACTGGATGCTTCTCCTGGACTGATGTCAGATCCTTCTCCAGAAGTTCCTTTGGGCATAGTGCCTGCGGATCTTGCATCTATTAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAGTTCCATATCAATGGCTGAAACTGTAGACGATGGTGTGTCAGACGTTTCAAAGACGAAAGCTGTGCAAACTGTTTCTGAACGAAAGGCCACACCGGTAAATGATGGTTTTGGCGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATATATCAGATATTAAGAGTACAGTCATTTCAGAGGAAAAAATTATCGGAGTGTGGAACTGATGAATTTGGATCGTCAGATAATAGTATTCTTTCATTTATGAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCAGCTCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGGAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGACACCAGGTGAGGAAGCAATATAGAAAGATTGTCTGGTCTGTAGGAATGATAGACAAGATTATCTTGAGATGGAGACGGAAGGGCAGTGGTTTGCGAGGCTTCCGGTCAGATGCAGTTGCCAAGGATCCACCCTCCTTGATGGCACCGCCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCTGAGGGACGAGACCAATACCGTAGGCTTCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTGCTATGGTTGTTACTAGTACTTCAGAAGAGGTAATAGAAGGCGATGACATGATTGATATCGACACACTGCTGGATGACGACGCTTTGATGTCTATGACATTTGATTGA 3279 42.76 MADRGSYGLAPRLDIEQLLIEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNVGAVVETDEVSTSSQKSSTKSSSYSSSHNQAASENADSPSPTSTLTSFCEDADNEDTYQATSRFHSFPTSPKMGNGLLVNKPDAGQSNFYFPHSSSNNVEGWSSVPAVDYVAQVQKDGLGGNSGDTSMMGSQKTLSSASWEEILHQCTTGYQTVPSHVLTSSIEPLSSGIVIGQENSTPDKILTSNSAIKEDFGNSLTMTSNWQVPFEDNTLSFSKEHVDHFPDLYSVCDIDSRLTAQKSHDATFGSGHEMFCAHPGKQNEEILPNLELQFKEGESYPAMRLSSDNDMPKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTVTDLETEVVVIGRFLGNNNGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYTAGATEELRMHLRFERLLSLEPSDPSNDLSEGALEKQNLIRELITIKEEDDSYGEDPNPQNDQIQHQSKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAALCGRELTVVTLITLDASPGLMSDPSPEVPLGIVPADLASINGHKGISGFLAEAALTSYVSSISMAETVDDGVSDVSKTKAVQTVSERKATPVNDGFGDLSLKDSLTAVCNATQAAGRIYQILRVQSFQRKKLSECGTDEFGSSDNSILSFMKARARKSGLSNNPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYRKIVWSVGMIDKIILRWRRKGSGLRGFRSDAVAKDPPSLMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSAMVVTSTSEEVIEGDDMIDIDTLLDDDALMSMTFD 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1718302 1734831 - MELO3C018642.2.1 Cme01g00240 317216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00240 1092 ProSiteProfiles IQ motif profile. 915 944 IPR000048 GO:0005515
Cme01g00240 1092 SMART iq_5 914 936 IPR000048 GO:0005515
Cme01g00240 1092 SMART iq_5 937 959 IPR000048 GO:0005515
Cme01g00240 1092 ProSiteProfiles IQ motif profile. 938 962 IPR000048 GO:0005515
Cme01g00240 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 914 965 IPR027417 -
Cme01g00240 1092 Pfam IPT/TIG domain 507 580 IPR002909 -
Cme01g00240 1092 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cme01g00240 1092 Gene3D Immunoglobulins 501 596 IPR013783 -
Cme01g00240 1092 Gene3D - 915 962 - -
Cme01g00240 1092 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1092 - -
Cme01g00240 1092 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cme01g00240 1092 Gene3D - 672 848 IPR036770 -
Cme01g00240 1092 SUPERFAMILY Ankyrin repeat 687 802 IPR036770 -
Cme01g00240 1092 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1092 - -
Cme01g00240 1092 SUPERFAMILY E set domains 508 592 IPR014756 -
Cme01g00240 1092 MobiDBLite consensus disorder prediction 147 189 - -
Cme01g00240 1092 Pfam IQ calmodulin-binding motif 916 935 IPR000048 GO:0005515
Cme01g00240 1092 Pfam IQ calmodulin-binding motif 940 959 IPR000048 GO:0005515
Cme01g00240 1092 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00240 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 2084.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00240 Cme-Chr1:1718302 Cme08g02483 Cme-Chr8:31736008 1.95E-55 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00240 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.9 1.9e-276 949.1
Cme11g02321 . 6 933 CAMTA Transcription Factor Family AT1G67310 53.5 2.0e-259 892.5
Cme11g02068 . 34 908 CAMTA Transcription Factor Family AT3G16940 54.3 1.1e-258 889.8
Cme11g02068 . 11 630 CAMTA Transcription Factor Family AT4G16150 53.7 7.1e-195 677.9
Cme01g00240 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.9 1.9e-276 949.1
Cme11g02321 . 6 933 CAMTA Transcription Factor Family AT1G67310 53.5 2.0e-259 892.5
Cme11g02068 . 11 630 CAMTA Transcription Factor Family AT4G16150 53.7 7.1e-195 677.9
Cme11g02068 . 34 908 CAMTA Transcription Factor Family AT3G16940 54.3 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40690 PF03859 CG-1 8.40E-51 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00240 Cme_Chr01 FPKM 39.687279 43.670509 24.611017 26.258793 8.16628 7.135696 10.740401 45.614433 47.960823 51.056728