Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00240 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTACGGAACTACACTAAGTTTCGTATTGCTTCAGAGCCTCCAGATAGACCATCAAGTGGGTCACTTTTTCTTTTTGACCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTCAAGGGTAATAGAACCAATGTTGGAGCTGTCGTTGAGACTGATGAGGTTTCAACAAGTTCACAGAAGAGCAGTACTAAAAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGACTCCCCCAGTCCGACTAGCACTTTGACATCATTTTGTGAAGATGCTGATAATGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAACCAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCCTCTTCCAACAACGTTGAAGGTTGGTCATCAGTTCCTGCTGTGGATTATGTAGCACAAGTCCAGAAAGATGGACTTGGGGGTAACAGTGGTGATACTAGTATGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCATCAATGTACAACTGGATATCAAACTGTACCTTCTCATGTTTTAACCTCTTCAATTGAACCTCTGTCTTCTGGAATTGTCATTGGACAAGAGAATTCAACTCCTGACAAGATTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAATTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAACACTTTGTCCTTTTCAAAAGAGCACGTTGATCATTTTCCAGATTTGTATTCAGTTTGTGACATAGATAGCAGGTTAACTGCGCAAAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTGTGCTCATCCTGGCAAACAGAATGAGGAGATTTTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATCATATCCAGCTATGAGGTTGAGTTCTGACAATGATATGCCTAAAGAAGGTACCATCAGCTATTCTCTGACTTTGAAACAATCATTAATAGATGGGGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGACCACTGTAGAATGTGGTGATATGGTTGATGATTCGTCATTAAGCCCTTCTATTTCTGAAGACCAGCTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACAGTTACAGATTTAGAAACTGAGGTTGTGGTTATAGGGAGGTTTCTGGGGAACAATAATGGCACAAACTGCCACTGGTCATGTATGTTTGGGGAAGTTGAGGTCCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCATGCACCACCACATAGTGTTGGGCGAGTCCCCTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCGGGCTCTGCGCAAGATGTAGATGTTACCGATATATACACTGCTGGTGCTACAGAAGAATTACGTATGCATTTACGATTTGAGAGGTTATTGTCCCTTGAACCTTCAGATCCTTCAAATGACCTCTCTGAAGGTGCTTTGGAGAAGCAAAACTTAATCAGAGAGCTTATCACAATAAAGGAAGAAGATGATAGTTATGGGGAAGATCCAAATCCTCAGAATGATCAAATTCAGCATCAAAGCAAGGAGTTCCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTTATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATCAACTTTCGGGATATTAATGGATGGACTGCTCTTCATTGGGCAGCATTATGTGGCAGGGAGTTGACAGTTGTAACCCTTATAACACTGGATGCTTCTCCTGGACTGATGTCAGATCCTTCTCCAGAAGTTCCTTTGGGCATAGTGCCTGCGGATCTTGCATCTATTAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAGTTCCATATCAATGGCTGAAACTGTAGACGATGGTGTGTCAGACGTTTCAAAGACGAAAGCTGTGCAAACTGTTTCTGAACGAAAGGCCACACCGGTAAATGATGGTTTTGGCGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATATATCAGATATTAAGAGTACAGTCATTTCAGAGGAAAAAATTATCGGAGTGTGGAACTGATGAATTTGGATCGTCAGATAATAGTATTCTTTCATTTATGAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCAGCTCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGGAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGACACCAGGTGAGGAAGCAATATAGAAAGATTGTCTGGTCTGTAGGAATGATAGACAAGATTATCTTGAGATGGAGACGGAAGGGCAGTGGTTTGCGAGGCTTCCGGTCAGATGCAGTTGCCAAGGATCCACCCTCCTTGATGGCACCGCCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCTGAGGGACGAGACCAATACCGTAGGCTTCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTGCTATGGTTGTTACTAGTACTTCAGAAGAGGTAATAGAAGGCGATGACATGATTGATATCGACACACTGCTGGATGACGACGCTTTGATGTCTATGACATTTGATTGA 3279 42.76 MADRGSYGLAPRLDIEQLLIEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNVGAVVETDEVSTSSQKSSTKSSSYSSSHNQAASENADSPSPTSTLTSFCEDADNEDTYQATSRFHSFPTSPKMGNGLLVNKPDAGQSNFYFPHSSSNNVEGWSSVPAVDYVAQVQKDGLGGNSGDTSMMGSQKTLSSASWEEILHQCTTGYQTVPSHVLTSSIEPLSSGIVIGQENSTPDKILTSNSAIKEDFGNSLTMTSNWQVPFEDNTLSFSKEHVDHFPDLYSVCDIDSRLTAQKSHDATFGSGHEMFCAHPGKQNEEILPNLELQFKEGESYPAMRLSSDNDMPKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTVTDLETEVVVIGRFLGNNNGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYTAGATEELRMHLRFERLLSLEPSDPSNDLSEGALEKQNLIRELITIKEEDDSYGEDPNPQNDQIQHQSKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAALCGRELTVVTLITLDASPGLMSDPSPEVPLGIVPADLASINGHKGISGFLAEAALTSYVSSISMAETVDDGVSDVSKTKAVQTVSERKATPVNDGFGDLSLKDSLTAVCNATQAAGRIYQILRVQSFQRKKLSECGTDEFGSSDNSILSFMKARARKSGLSNNPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYRKIVWSVGMIDKIILRWRRKGSGLRGFRSDAVAKDPPSLMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSAMVVTSTSEEVIEGDDMIDIDTLLDDDALMSMTFD 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1718302 1734831 - MELO3C018642.2.1 Cme01g00240 317216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00240 1092 ProSiteProfiles IQ motif profile. 915 944 IPR000048 GO:0005515
Cme01g00240 1092 SMART iq_5 914 936 IPR000048 GO:0005515
Cme01g00240 1092 SMART iq_5 937 959 IPR000048 GO:0005515
Cme01g00240 1092 ProSiteProfiles IQ motif profile. 938 962 IPR000048 GO:0005515
Cme01g00240 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 914 965 IPR027417 -
Cme01g00240 1092 Pfam IPT/TIG domain 507 580 IPR002909 -
Cme01g00240 1092 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cme01g00240 1092 Gene3D Immunoglobulins 501 596 IPR013783 -
Cme01g00240 1092 Gene3D - 915 962 - -
Cme01g00240 1092 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1092 - -
Cme01g00240 1092 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cme01g00240 1092 Gene3D - 672 848 IPR036770 -
Cme01g00240 1092 SUPERFAMILY Ankyrin repeat 687 802 IPR036770 -
Cme01g00240 1092 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1092 - -
Cme01g00240 1092 SUPERFAMILY E set domains 508 592 IPR014756 -
Cme01g00240 1092 MobiDBLite consensus disorder prediction 147 189 - -
Cme01g00240 1092 Pfam IQ calmodulin-binding motif 916 935 IPR000048 GO:0005515
Cme01g00240 1092 Pfam IQ calmodulin-binding motif 940 959 IPR000048 GO:0005515
Cme01g00240 1092 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00240 Cme-Chr1:1718302 Cme08g02483 Cme-Chr8:31736008 1.95E-55 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40690 PF03859 CG-1 8.40E-51 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00240 K21596 - csv:101203707 2084.69