Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00246 ATGGCCACTCTGTCGGTGCCCGATCAGCTACCTCCGGTGGCTGAAGATTGCGATCGCCTCCATAATGCCTTTCAAGGCTGGGGAACGGATGAGGGGGCGATTATATCCATATTGGCTCACAGAAATGCTAAACAGCGCAGTCTGATTCGTCAAACCTATGCCGAAACGTATGGAGAAGATCTCTTGAAGTCGCTCGACAAAGAACTCTCAAGTGATTTTGAGAGAGCTGTGCTTTTATGGACATTACATCCTGCTGAACGTGATGCATTACTAGCCAATGAAGCAATAAGGAAACTTAAGCATTTTGTTGTATTGGAAATAGCTTGTAGTAGAACTCCACGGGATCTATTTTTAGTGAAGGAAGAATACCATGCTCGTTTCAAGCGGTCAATTGAAGAAGATGTCGCACAATACACTACAGGTGATTTTCGCAGGCTTCTGGTGCCCCTCGTGACTGCATATCGATATGATGGCCCTGAGGTAAACGCTACCTTAGCCACATCAGAGGCTAGGATACTTCACGAGAAAATTACTGAGAAAGCCTACAATGATGAGGAGCTCATCAGGATTATAAGCACTAGGAGCAAGGCACAACTAAATGCTACATTTAATCATTACAATGACCAATTTGGGAATGCTATCAGCAAGGATCTAAAGACCGACCCCAATGACAACTACCTTAAACTTCTGAGATCTGCTATAAAGTGTCTAACTTGGCCTGAGAAATATTTCGAGAAAGTTCTTCGTTTAGCCATCAAAGGGCTTGGGACTGATGAAGAGGCTTTGACTAGGGTAGTAGTAACTCGAGCTGAGGTTGACATGAAACGCATCGTTGAAGAGTATTATAGGAGAAACAGTGTCCCTTTTGGTCAGGCAATAAAAGGCGATACCTCTGGAGATTATGAATCAATGCTTCTTGCGTTGGTTGGTAAAGAGAGTGATTAA 945 43.7 MATLSVPDQLPPVAEDCDRLHNAFQGWGTDEGAIISILAHRNAKQRSLIRQTYAETYGEDLLKSLDKELSSDFERAVLLWTLHPAERDALLANEAIRKLKHFVVLEIACSRTPRDLFLVKEEYHARFKRSIEEDVAQYTTGDFRRLLVPLVTAYRYDGPEVNATLATSEARILHEKITEKAYNDEELIRIISTRSKAQLNATFNHYNDQFGNAISKDLKTDPNDNYLKLLRSAIKCLTWPEKYFEKVLRLAIKGLGTDEEALTRVVVTRAEVDMKRIVEEYYRRNSVPFGQAIKGDTSGDYESMLLALVGKESD 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1790973 1793929 - MELO3C018648.2.1 Cme01g00246 317222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00246 314 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Cme01g00246 314 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Cme01g00246 314 PRINTS Annexin family signature 252 272 IPR001464 GO:0005509|GO:0005544
Cme01g00246 314 PRINTS Annexin family signature 296 309 IPR001464 GO:0005509|GO:0005544
Cme01g00246 314 PRINTS Plant annexin signature 117 131 IPR009118 -
Cme01g00246 314 PRINTS Plant annexin signature 159 179 IPR009118 -
Cme01g00246 314 PRINTS Plant annexin signature 224 242 IPR009118 -
Cme01g00246 314 Gene3D Annexin 163 238 IPR037104 GO:0005509|GO:0005544
Cme01g00246 314 ProSiteProfiles Annexin repeat profile. 164 235 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 SMART annex3 256 308 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 SMART annex3 181 233 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 SMART annex3 100 150 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 ProSitePatterns Annexin repeat signature. 256 308 IPR018252 GO:0005509|GO:0005544
Cme01g00246 314 Gene3D Annexin 83 151 IPR037104 GO:0005509|GO:0005544
Cme01g00246 314 Gene3D Annexin 239 313 IPR037104 GO:0005509|GO:0005544
Cme01g00246 314 ProSiteProfiles Annexin repeat profile. 239 310 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 Pfam Annexin 169 230 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 Pfam Annexin 244 308 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 Pfam Annexin 88 150 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 Pfam Annexin 16 79 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 SUPERFAMILY Annexin 2 312 IPR037104 GO:0005509|GO:0005544
Cme01g00246 314 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Cme01g00246 314 ProSiteProfiles Annexin repeat profile. 83 152 IPR018502 GO:0005509|GO:0005544
Cme01g00246 314 PANTHER ANNEXIN D2 7 312 - -
Cme01g00246 314 PANTHER ANNEXIN 7 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00246 K17098 ANNAT; annexin D - csv:101218520 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00246 Cme-Chr1:1790973 Cme07g01149 Cme-Chr7:15074389 8.15E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00768 Csa07g00545 . Cme01g00246 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01506 Cam09g1655 Cec09g1662 Cco09g1712 . . Cre09g1546 . . Chy01g00259 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001965 1 3 3 2 1 2 3 2 2 2 2 2 3 2 3 3 2 4 3 2 2 2 2 2 2 2 1 3 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00246 Cme_Chr01 FPKM 3.002833 2.107533 0.0 0.156139 0.0 0.0 0.0 0.336365 0.0 0.418647