Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00253 ATGACAAAAGTTGGTTTTGGTACTGCAATGCTTGTCCCGGTCATGTTTATGATTGTGTTGTTATTCACCGTCGTGAACGGTCAGGGCACACGCGTTGGTTTCTACTCCAGATCTTGCCCTCAAGCTGAGTCCATTGTTGCATCAACTGTTCGATCTCATTTTCAATCTGATCCTAAGATTGCTCCTGGTTTATTACGAATGCACTTCCACGATTGCTTCGTTCGGGGTTGTGATGCCTCCGTGCTCCTTGCTGGCGCTAACAGTGAGAGGACTGCATTACCAAACCTTTCGTTAAATGGGTTCGAAGTGATTGACGATGCTAAATCTCAACTTGAAGCTGCTTGTCCTGGCGTTGTATCTTGTGCGGACATTCTTGCTCTCGCTGCTCGTGACTCAGTGGTTTTGACAAGTGGAATGCGTTGGGGAGTGCCCACAGGACGAAGAGATGGGACAATTTCGGTGGCTTCAGAAGCTAACAACTTGCCTGGATTTACAGATTCTATTGAGGTTCAAAAGCAAAAATTTAGTGATAAAGGTCTCAACACTCAAGACCTTGTCACTCTCGTGGGTGGACACACAATTGGCACAACACAATGCCAATTTTTCAGATACAGACTCTTCAATTTCACAGCAGCCGGCGGTCCAGATCCAACCATGGACCCAGCCTTCGTGACTCAAATGCAGGCACTGTGTCCTCAAAACGGAGATGGAACCCGTAGGGTCGGTTTGGACACGGGCAGCGTCGGGCGTTTCGACACAACCTTCTTCTCAAACTTAAGGAACGGACGTGGGGTTTTGGAGTCGGATCAGAAGCTATGGACGGACGCTTCCACTCGTACTTTTGTACAACGGTTTCTGGGTTTGAGAGGCGTTTTGGGTTTGACCTTCAATCTTGAGTTTGGGAGATCTATGGTGAAGATGAGTAATATTGAAGTTAAAACTGGAAATCAAGGAGAAATTCGTAAAGTTTGTTCTGCAGTTAATTAA 987 46.5 MTKVGFGTAMLVPVMFMIVLLFTVVNGQGTRVGFYSRSCPQAESIVASTVRSHFQSDPKIAPGLLRMHFHDCFVRGCDASVLLAGANSERTALPNLSLNGFEVIDDAKSQLEAACPGVVSCADILALAARDSVVLTSGMRWGVPTGRRDGTISVASEANNLPGFTDSIEVQKQKFSDKGLNTQDLVTLVGGHTIGTTQCQFFRYRLFNFTAAGGPDPTMDPAFVTQMQALCPQNGDGTRRVGLDTGSVGRFDTTFFSNLRNGRGVLESDQKLWTDASTRTFVQRFLGLRGVLGLTFNLEFGRSMVKMSNIEVKTGNQGEIRKVCSAVN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1843010 1845179 - MELO3C018656.2.1 Cme01g00253 317229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00253 328 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 CDD secretory_peroxidase 31 327 IPR033905 GO:0004601|GO:0042744
Cme01g00253 328 Pfam Peroxidase 46 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 ProSiteProfiles Plant heme peroxidase family profile. 29 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PANTHER PEROXIDASE 25-RELATED 11 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 SUPERFAMILY Heme-dependent peroxidases 31 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00253 328 Gene3D Peroxidase, domain 2 162 307 - -
Cme01g00253 328 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Cme01g00253 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Cme01g00253 328 PANTHER PEROXIDASE 11 326 - -
Cme01g00253 328 Gene3D - 33 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00253 Cme-Chr1:1843010 Cme02g01208 Cme-Chr2:17409595 1.14E-128 dispersed
Cme02g01212 Cme-Chr2:17452736 Cme01g00253 Cme-Chr1:1843010 7.49E-51 dispersed
Cme12g00667 Cme-Chr12:12219444 Cme01g00253 Cme-Chr1:1843010 8.63E-42 dispersed
Cme01g00251 Cme-Chr1:1839547 Cme01g00253 Cme-Chr1:1843010 1.05E-67 proximal
Cme01g00252 Cme-Chr1:1841521 Cme01g00253 Cme-Chr1:1843010 9.98E-53 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00253 K00430 - csv:101217567 617.846