Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00256 ATGAGCGGACGGATCGTGAACGATGAGGGAACGAGACAGTTGGAGCAGCGAAACGAAGTGGCACCGCCCTCAAAGGTGGGCGTGCCACCGAGAAAGAACGCGTGGGAAGAGTTTAATTGTGTAGTGAAAGAGACGTTTTTCTCTGATCAGCCTCTTCGCCAATTCAAGGACCAACCTAAGCGCAAGAAGGCTGCTTTGTTTGTACAAGGTCTCTTCCCCATATTTCAATGGGGAAGAGGATACAACTTTACTAAGTTCAAAGGAGACCTCATTGCTGGCCTAACCATTGCTAGTCTTTGCATTCCTCAAGACATCGGATACGCCAAACTCGCTAATTTGCCCGCTGAAAATGGACTTTATAGTAGCTTTGTCCCCCCATTGGTATACGCAGTGATGGGGAGCTCAAGGGATATTGCAATAGGCCCCGTAGCTGTCGTATCGCTTTTGCTCGGGACGCTGCTGCGACAAGTATACGATCCAGTGAAAGAGTTGGAGCAGTACAAGAGGTTGGCTTTTACGGCGACTTTCTTCGCCGGAGTAACTCAGTTGGCTTTAGGGTTCCTCCGGCTGGGATTCTTGATCGACTTTCTGTCGCATGCTGCCATTGTGGGGTTCATGGGCGGCGCCGCCGTGACCATCGCTCTTCAGCAGCTGAAAGGTCTTCTTGGCATATCAAACTTCACCAAGAAAACTGATATCATTTCTGTGATGAGATCTGTTTGGAGTAATGTGAACCATGGGTGGAACTGGCAGACAATACTCATTGGGGTTTCATTTTTGGCCTTTCTTTTGGCTACAAAATATATTGGCAAGAAATACAAGAAATTGTTCTGGATTCCAGCCATCGCTCCATTAATATCTGTTATACTTTCCACATTTTTTGTGTACATCACAAGAGCAGATAAACATGGAGTTCAGATTGTAAAACACATAGAGAAAGGAATAAATCCCCCATCTCTTGATGAGATATTCTTCCATGGAGACAATCTGACCAAAGGTTTCAAAATTGGAGTGGTTGCGGGTTTGATTGGCCTTACGGAAGCAGTGGCAATTGCAAGAACATTTGCAGACCTAAAAGACTATGAAATTGATGGTAACAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCAATGACTTCTTGCTATGTAGCAACAGGATCGTTCTCTCGGTCGGCAGTGAACTACATGGCCGGCTGCAACACACCGGTGTCGAACATCGTCATGGCATGCGTCGTTCTCTTGACATTACAAGTCATCACACCCCTTTTTAAGTATACCCCAAACGCCATTCTTGCCTCCATTATTATCTGTGCTGTCATCGGTCTCATCGACATCGATGCTGTGATTTTGCTATGGAAGATTGACAAATTCGACTTCATTGCCTGCATGGGAGCTTTCTTCGGCGTCGTGTTTGATTCCGTTGAGATTGGTCTTCTCATTGCTGTTAGTTTGTCATTGTTCAAAATTCTATTGCAAGTAACAAGACCCAGAATTGCGTTGCTTGGAAAACTCCCAAAGATTCCTATTTTTAGGAACATTTTGCAGTACCCTGGGGCAAAGAAGATTGCTGGAGTTCTAATTGTTAGGGTCGATTCTTCAATATACTTCTCCAATGCTAACTATGTCAAAGAAAGGATATTGAGATGGCTGGCAGATGAAACAGAGAAGCTAGAAGACCAATCTATGCCGATCAAAGTTGTGATCGTCGACATGTCTCCTGTAAACGATATCGACACGAGCGGCATTCATGCCTTGGAGGGTCTGCACTCTCATTTGCATAAGAAGGAAATTAGCCTTGCACTTGCAAATCCAGGGCCAGTGATCATGGAGAAGCTCGTAGCTGCAGAGTTCGATAAGCTCATTGGAGAAGACAACATTTTCCTAAGTGTTAACGAAGCTATTAAGATTTATGCCCCAAATGCTGTTCTTGATCCTTAA 1947 44.84 MSGRIVNDEGTRQLEQRNEVAPPSKVGVPPRKNAWEEFNCVVKETFFSDQPLRQFKDQPKRKKAALFVQGLFPIFQWGRGYNFTKFKGDLIAGLTIASLCIPQDIGYAKLANLPAENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLRQVYDPVKELEQYKRLAFTATFFAGVTQLALGFLRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGLLGISNFTKKTDIISVMRSVWSNVNHGWNWQTILIGVSFLAFLLATKYIGKKYKKLFWIPAIAPLISVILSTFFVYITRADKHGVQIVKHIEKGINPPSLDEIFFHGDNLTKGFKIGVVAGLIGLTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCNTPVSNIVMACVVLLTLQVITPLFKYTPNAILASIIICAVIGLIDIDAVILLWKIDKFDFIACMGAFFGVVFDSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLPKIPIFRNILQYPGAKKIAGVLIVRVDSSIYFSNANYVKERILRWLADETEKLEDQSMPIKVVIVDMSPVNDIDTSGIHALEGLHSHLHKKEISLALANPGPVIMEKLVAAEFDKLIGEDNIFLSVNEAIKIYAPNAVLDP 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1871896 1876698 - MELO3C018659.2.1 Cme01g00256 317232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00256 648 PANTHER SULFATE TRANSPORTER 24 647 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme01g00256 648 PANTHER SULFATE TRANSPORTER 1.2-LIKE 24 647 - -
Cme01g00256 648 CDD STAS_SulP_like_sulfate_transporter 519 633 - -
Cme01g00256 648 Pfam Sulfate permease family 86 466 IPR011547 GO:0016021
Cme01g00256 648 ProSiteProfiles STAS domain profile. 518 640 IPR002645 -
Cme01g00256 648 SUPERFAMILY SpoIIaa-like 523 640 IPR036513 -
Cme01g00256 648 Gene3D STAS domain 513 643 IPR036513 -
Cme01g00256 648 TIGRFAM sulP: sulfate permease 73 636 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme01g00256 648 MobiDBLite consensus disorder prediction 1 28 - -
Cme01g00256 648 Pfam STAS domain 519 636 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00256 Cme-Chr1:1871896 Cme09g00879 Cme-Chr9:11871499 0 dispersed
Cme01g00256 Cme-Chr1:1871896 Cme06g00580 Cme-Chr6:3732248 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00256 K17470 - csv:101202746 1231.47