Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00260 ATGTACCTGGTTGGTCAATCAGAAGATTTCTTATTAGTATGTGCAGTATTTCTTGTTTCTCTGCCACACTTGATTGATTACATTAACGTGTATGTAGCTGAAGAAGATCCTGAAATTAACCTGGGGCAGCTAAAAAAATATTCTCTACGCGAGCTGCAAGTTGCCACCGATTATTTTAGCCCACAGAACATTTTAGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTTAAACGATTGAAGGAGGAGCGAGCTGAGGTTGGAGAGCTTCAATTTCAGGCTGAAGTAGAGATGATCAGCATGGCTGTCCACCGTAATCTACTCCGTCTTAATGGATTTTGCATGTCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGCTTAAGAGAGCGTAAGCAATGCCAACCACCACTCAACTGGGCAATACGTAAACAAGTTGCTTTAGGGGCTGCACGAGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTATTAAATGATGAATACGAGGCAGTTGTTGGAGATTTTGGGTTGGTTAAACTCATGAACTACAAGGACACTCATGTCACAACTGCTGTTCGTGGAACAATTGGGCATATACCGCCGGAGTACCTCTCATCTGGAAAGTCCTCTGAAAAAACTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGACGATGTCATGTTGCTTGATTGGGTCAAAGGACTTCTGAATGATAAGAAACTGGCAACATTGGTTGATCCTGATCTCGGAGGTAATTACGTAGAGGAAGAACTGGAGCAGGTAATTCAAGTTGCTGTGCTTTGCACGCAAAGCTCCCCGGTGGAACGACCGAAAATGTCGGAGGTGTTGCAAATGCTGGAAGGCGATGGTTTAGCTGAAAGATGGGAGGAATGGCAGAAAGAAGAGAGCTCACGCCAAAACTTCAATAATATGGTTCATTCTTACCACTGGAGTAGTAGATCTCCCCAGTTTATTGATTCCATTGCTCATCTTCCTCCTGATGTGTTGTCTAGTCCAAGATGA 1164 42.53 MYLVGQSEDFLLVCAVFLVSLPHLIDYINVYVAEEDPEINLGQLKKYSLRELQVATDYFSPQNILGKGGFGKVYKGRLADGSLVAVKRLKEERAEVGELQFQAEVEMISMAVHRNLLRLNGFCMSPTERLLVYPYMANGSLASCLRERKQCQPPLNWAIRKQVALGAARGLEYLHNHCDPKIIHRDVKAANILLNDEYEAVVGDFGLVKLMNYKDTHVTTAVRGTIGHIPPEYLSSGKSSEKTDVFGYGVMLLELVTGQKAFDLARLAKDDDVMLLDWVKGLLNDKKLATLVDPDLGGNYVEEELEQVIQVAVLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRQNFNNMVHSYHWSSRSPQFIDSIAHLPPDVLSSPR 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1918658 1921635 + MELO3C018663.2.1 Cme01g00260 317236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00260 387 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 32 387 - -
Cme01g00260 387 Pfam Protein kinase domain 62 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00260 387 Gene3D Phosphorylase Kinase; domain 1 29 135 - -
Cme01g00260 387 PANTHER LRR RECEPTOR KINASE SERK2 32 387 - -
Cme01g00260 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Cme01g00260 387 SMART serkin_6 59 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00260 387 SUPERFAMILY Protein kinase-like (PK-like) 40 334 IPR011009 -
Cme01g00260 387 Gene3D Transferase(Phosphotransferase) domain 1 136 353 - -
Cme01g00260 387 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Cme01g00260 387 ProSiteProfiles Protein kinase domain profile. 59 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00260 Cme-Chr1:1918658 Cme07g01180 Cme-Chr7:15868183 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64592 PF00069 Pkinase 1.80E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00260 K13416 - csv:101216386 674.47