Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00280 ATGCCTATTTCTAGTACCCTACAGTTATATGTATTTAGAGCTGTTGTGATAATGATTATCGCTACTACCTTTCATGAAACATTACAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTTGGCAGACCACGTCATACTGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGTGATGAAGCTCAGTCGAAAAGAGGTATTCTTACATTGAAATACCCAATTGAACATGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCACCTGAAGAGCATCCGGTACTTCTTACTGAAGCACCACTCAACCCGAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTTGATGTACCTGCCATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCCGGTGATGGAGTGAGTCACACAGTGCCCATATACGAGGGGTTTTCACTCCCTCATGCTATCCTACGTCTCGACCTTGCTGGTCGTGACTTGACTGATGCTTTGATGAAAATCCTTACCGAAAGAGGTTACATGTTCACAACAACAGCAGAACGGGAAATTGTCCGTGATGTGAAGGAGAAACTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAAACTGCCAGGACTAGTTCGGCCATTGAGAAAAACTATGAACTACCCGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTGTTGTTCCAACCATCTCTGATTGGGATGGAATCTGCTGGAATTCATGAAACCACATATAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTATATGGTAACATTGTCCTCAGTGGCGGTACAACAATGTTCCCAGGCATTGCTGATCGAATGAGCAAAGAAATCACAGCTCTCGCCCCCAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCCGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATACGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTAA 1161 45.31 MPISSTLQLYVFRAVVIMIIATTFHETLQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2107728 2109943 - MELO3C018683.2.1 Cme01g00280 317256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00280 386 PANTHER ACTIN-7-LIKE 22 385 - -
Cme01g00280 386 PRINTS Actin signature 37 46 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 247 263 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 60 71 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 151 170 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 126 139 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 72 94 IPR004000 -
Cme01g00280 386 CDD NBD_sugar-kinase_HSP70_actin 85 192 - -
Cme01g00280 386 PANTHER ACTIN 22 385 IPR004000 -
Cme01g00280 386 Gene3D - 27 380 - -
Cme01g00280 386 ProSitePatterns Actins signature 1. 64 74 IPR004001 -
Cme01g00280 386 SUPERFAMILY Actin-like ATPase domain 158 386 IPR043129 -
Cme01g00280 386 Gene3D Actin; Chain A, domain 4 191 282 - -
Cme01g00280 386 SMART actin_3 13 386 IPR004000 -
Cme01g00280 386 ProSitePatterns Actins and actin-related proteins signature. 115 127 IPR020902 -
Cme01g00280 386 Gene3D - 149 349 - -
Cme01g00280 386 SUPERFAMILY Actin-like ATPase domain 27 164 IPR043129 -
Cme01g00280 386 ProSitePatterns Actins signature 2. 367 375 IPR004001 -
Cme01g00280 386 Pfam Actin 26 386 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00280 Cme-Chr1:2107728 Cme08g01062 Cme-Chr8:6930941 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00280 K10355 - csv:101214459 714.531