Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00280 ATGCCTATTTCTAGTACCCTACAGTTATATGTATTTAGAGCTGTTGTGATAATGATTATCGCTACTACCTTTCATGAAACATTACAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTTGGCAGACCACGTCATACTGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGTGATGAAGCTCAGTCGAAAAGAGGTATTCTTACATTGAAATACCCAATTGAACATGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCACCTGAAGAGCATCCGGTACTTCTTACTGAAGCACCACTCAACCCGAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTTGATGTACCTGCCATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCCGGTGATGGAGTGAGTCACACAGTGCCCATATACGAGGGGTTTTCACTCCCTCATGCTATCCTACGTCTCGACCTTGCTGGTCGTGACTTGACTGATGCTTTGATGAAAATCCTTACCGAAAGAGGTTACATGTTCACAACAACAGCAGAACGGGAAATTGTCCGTGATGTGAAGGAGAAACTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAAACTGCCAGGACTAGTTCGGCCATTGAGAAAAACTATGAACTACCCGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTGTTGTTCCAACCATCTCTGATTGGGATGGAATCTGCTGGAATTCATGAAACCACATATAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTATATGGTAACATTGTCCTCAGTGGCGGTACAACAATGTTCCCAGGCATTGCTGATCGAATGAGCAAAGAAATCACAGCTCTCGCCCCCAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCCGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATACGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTAA 1161 45.31 MPISSTLQLYVFRAVVIMIIATTFHETLQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2107728 2109943 - MELO3C018683.2.1 Cme01g00280 317256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00280 386 PANTHER ACTIN-7-LIKE 22 385 - -
Cme01g00280 386 PRINTS Actin signature 37 46 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 247 263 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 60 71 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 151 170 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 126 139 IPR004000 -
Cme01g00280 386 PRINTS Actin signature 72 94 IPR004000 -
Cme01g00280 386 CDD NBD_sugar-kinase_HSP70_actin 85 192 - -
Cme01g00280 386 PANTHER ACTIN 22 385 IPR004000 -
Cme01g00280 386 Gene3D - 27 380 - -
Cme01g00280 386 ProSitePatterns Actins signature 1. 64 74 IPR004001 -
Cme01g00280 386 SUPERFAMILY Actin-like ATPase domain 158 386 IPR043129 -
Cme01g00280 386 Gene3D Actin; Chain A, domain 4 191 282 - -
Cme01g00280 386 SMART actin_3 13 386 IPR004000 -
Cme01g00280 386 ProSitePatterns Actins and actin-related proteins signature. 115 127 IPR020902 -
Cme01g00280 386 Gene3D - 149 349 - -
Cme01g00280 386 SUPERFAMILY Actin-like ATPase domain 27 164 IPR043129 -
Cme01g00280 386 ProSitePatterns Actins signature 2. 367 375 IPR004001 -
Cme01g00280 386 Pfam Actin 26 386 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00280 K10355 ACTF; actin, other eukaryote - csv:101214459 714.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00280 Cme-Chr1:2107728 Cme08g01062 Cme-Chr8:6930941 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.4e-215 743.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.8e-213 738.4
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.0e-212 734.9
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT2G37620 94.2 3.6e-201 697.6
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT2G37620 90.2 1.0e-195 679.5
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 3.7e-214 740.7
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.2e-214 740.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.2e-210 727.6
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.2e-210 727.6
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT5G59370 92.8 2.4e-197 684.9
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT5G59370 89.9 9.4e-194 672.9
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.6e-214 741.9
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 2.8e-214 741.1
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.2e-214 740.0
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G46520 93.0 1.1e-197 686.0
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G46520 90.2 4.2e-194 674.1
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.3e-215 744.2
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.3e-215 743.8
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.1e-213 737.6
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.0e-213 736.1
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.0e-213 736.1
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G12110 94.4 2.3e-200 694.9
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G12110 89.9 5.0e-195 677.2
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.6e-209 723.8
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 4.6e-209 723.8
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.6e-209 723.8
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT3G18780 93.0 2.2e-198 688.3
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT3G18780 85.4 1.5e-188 655.6
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.6e-209 725.3
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.0e-209 723.4
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.9e-209 723.0
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT1G49240 93.0 2.2e-198 688.3
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT1G49240 85.7 5.3e-189 657.1
Cme08g01062 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.9e-217 749.6
Cme11g00076 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.9e-217 749.6
Cme04g02242 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.2e-214 740.0
Cme10g00888 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.1e-213 737.6
Cme09g00478 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 5.8e-212 733.4
Cme01g00280 . 28 386 Cytoskeleton Gene Families AT5G09810 95.3 9.4e-202 699.5
Cme08g02402 . 1 351 Cytoskeleton Gene Families AT5G09810 89.7 2.5e-194 674.9
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 2.4e-56 214.9
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT2G19760 73.3 5.1e-54 207.2
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT2G19760 64.1 3.3e-53 204.5
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 6.0e-55 210.3
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT4G29350 74.0 1.7e-54 208.8
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT4G29350 65.4 3.3e-53 204.5
Cme05g02014 . 1 133 Cytoskeleton Gene Families AT4G29340 85.8 2.9e-65 244.6
Cme04g01148 . 51 181 Cytoskeleton Gene Families AT4G29340 68.7 6.4e-52 200.3
Cme05g02013 . 1 156 Cytoskeleton Gene Families AT4G29340 59.7 2.7e-50 194.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00280 Cme_Chr01 FPKM 32.87619 26.707087 0.439035 0.0 0.0 0.5387 0.0 0.0 0.0 0.0