Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00287 ATGGATCAATCGGAGCGTTCTCAGCATCAGCAACAATCACAGCAACCTGCAGGTGGTGTGGGTGCAGGCCAATTACAATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCCGGAACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCCAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAACACTTCCACCACCAGCAGCAGCAGCAGCAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCATAGTCTCCCTCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGACGTCCGAATGATTTCCGCTGAAGCACCGGTTATATTTGCAAAAGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCATGGATTCACACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCAAGGACAGATGTCTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACAAAAGCCTCCCTTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCGGTGGGTGCTACAGGAATGATAATGGGGAAGCAATTAGATCAAGCGAACATGTATGGTGCCACTGCACAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACCCAACCACAGCAGCAACAACAAACTCAGCAGCAAAGTGATGGATAG 801 46.07 MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQPRPSMPFMPWPHTQPQQQQQTQQQSDG 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2161775 2164055 - MELO3C018689.2.1 Cme01g00287 317263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00287 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Cme01g00287 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 260 - -
Cme01g00287 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 260 - -
Cme01g00287 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677
Cme01g00287 266 MobiDBLite consensus disorder prediction 250 266 - -
Cme01g00287 266 MobiDBLite consensus disorder prediction 237 266 - -
Cme01g00287 266 MobiDBLite consensus disorder prediction 1 59 - -
Cme01g00287 266 MobiDBLite consensus disorder prediction 1 39 - -
Cme01g00287 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00287 Cme-Chr1:2161775 Cme02g00106 Cme-Chr2:787039 2.12E-82 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40694 PF00125 Histone 6.00E-18 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00287 K08066 - csv:101213813 421.394