Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00287 ATGGATCAATCGGAGCGTTCTCAGCATCAGCAACAATCACAGCAACCTGCAGGTGGTGTGGGTGCAGGCCAATTACAATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCCGGAACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCCAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAACACTTCCACCACCAGCAGCAGCAGCAGCAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCATAGTCTCCCTCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGACGTCCGAATGATTTCCGCTGAAGCACCGGTTATATTTGCAAAAGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCATGGATTCACACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCAAGGACAGATGTCTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACAAAAGCCTCCCTTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCGGTGGGTGCTACAGGAATGATAATGGGGAAGCAATTAGATCAAGCGAACATGTATGGTGCCACTGCACAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACCCAACCACAGCAGCAACAACAAACTCAGCAGCAAAGTGATGGATAG 801 46.07 MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQPRPSMPFMPWPHTQPQQQQQTQQQSDG 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2161775 2164055 - MELO3C018689.2.1 Cme01g00287 317263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00287 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Cme01g00287 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 260 - -
Cme01g00287 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 260 - -
Cme01g00287 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677
Cme01g00287 266 MobiDBLite consensus disorder prediction 250 266 - -
Cme01g00287 266 MobiDBLite consensus disorder prediction 237 266 - -
Cme01g00287 266 MobiDBLite consensus disorder prediction 1 59 - -
Cme01g00287 266 MobiDBLite consensus disorder prediction 1 39 - -
Cme01g00287 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00287 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101213813 421.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00287 Cme-Chr1:2161775 Cme02g00106 Cme-Chr2:787039 2.12E-82 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g02068 . 97 281 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 4.3e-88 321.2
Cme02g00106 . 81 248 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Cme01g00287 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.7e-53 204.1
Cme02g00106 . 1 258 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.0 5.1e-57 218.0
Cme01g00287 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.6e-49 191.0
Cme02g02068 . 96 195 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.1e-43 171.0
Cme02g00106 . 22 248 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 5.4e-61 231.1
Cme01g00287 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.1e-52 202.6
Cme02g02068 . 96 255 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cme02g02068 . 96 254 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.5e-38 155.2
Cme02g02068 . 97 281 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 3.5e-80 295.0
Cme02g00106 . 81 249 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.5e-50 194.5
Cme01g00287 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Cme01g00287 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.2e-64 242.3
Cme02g02068 . 97 220 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.0e-50 194.9
Cme02g00106 . 53 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.8e-50 194.1
Cme03g01414 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.0 5.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40694 PF00125 Histone 6.00E-18 CL0012 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00287 Cme_Chr01 FPKM 7.378277 9.213085 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0