Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00295 ATTCTTTCCATTTTTTTCTTTGAACAACAAAATTGGTTTCCCTTAATTTTCTGTTCCCCCTCGTCTACGCTTCATTCGGATCTCTCCCTTTTTTCCCTCTCTTCCCTTTCATGTTACCCCTTTCATCCATCCTCCTTCTCGGCATCGAGAGCTTCCCCTCCTCCATTTTCCCTTTCCTTCAAGCTCTCGATCCCCTTCTCACCCACATCGTCATCAATGGACAACATTACTGCTCAATTAAAGCGAGGTATCTCCCGCCAATTCTCCACCGGTTCTTTACGCCGTACCTTAAGTCGTCAGTTCACCCGTCAATCCTCTCTTGATCCTAGAAGGAACAATTTGAGGTTTAGCTTTGGGAGGCAATCTTCTTTGGACCCTATTCGCCGTTGTCCCGATGAAGATAATGAGCTTTCTATACCTGACAATTTGGATTCCACCATGCAGCTTCTCTTTATGGCTTGCCGTGGCGATGTTAGAGGTGTTGAGGATTTGCTTAATGATGGTACTGATGTTAATAGTATTGATTTGGATGGCCGTACTGCTTTGCATATTGCTGCTTGTGAAGGTCATGCTGCTGTTGTTAAGCTCTTGCTTAGTCGTAAGGCTAATATCGATGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCAGATGCTAAATATTATGGAAATACGGAGATTTACAATATTCTCAAGGCACGAGGAGCGAAAGTTCCGAAATTTAGGAAAACACCAATGACAGTTGCAAATCCTAGGGAAGTTCCAGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGATGGTATATCAAAGGGGGCATATCAAGTTGCCAAATGGAATGGTACAAAAGTCGCTGTGAAAATTCTTGATAAAGATTGTTACTGCAACCCAGATTCTATAAATGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCCAATGTAGTTCAGTTTGTTGGTGCCGTTACCCAGAATTTGCCAATGATGATTGTTTCTGAATACCATCCGAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCTAAAGCCTTGAGATTTGCCCTCGATGTCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCAGATCCAATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCTTGATAAGATTGTCTAAAATGTCACAGGACAAAGCAAAACTAGCTCAACCAGTTGTTATTGACTATTCAAACTTGTACTTAGCACCCGAGATTTACAACGATGAAATATTTGACAGAAGCGTCGATTCGTTTTCATTCGGTCTCATTTTATACGAGATGGTTGAAGGTATTCAACCATTCCATCCCAAGCCTCCAGAAGAGGTTGCCAGAGCTATTTGTGCAGAAGGAAAGAGACCTCCATTTAAGATCAAATCAAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTTATGAGGCCTACTTTCTCCGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGGTGGTGGAAAGACACGTTCAAACTTCCCTGGAAATAA 1638 41.76 ILSIFFFEQQNWFPLIFCSPSSTLHSDLSLFSLSSLSCYPFHPSSFSASRASPPPFSLSFKLSIPFSPTSSSMDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDEDNELSIPDNLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAAVVKLLLSRKANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGAYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDVARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSQDKAKLAQPVVIDYSNLYLAPEIYNDEIFDRSVDSFSFGLILYEMVEGIQPFHPKPPEEVARAICAEGKRPPFKIKSKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2211582 2216399 - MELO3C018698.2.1 Cme01g00295 317271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00295 545 SMART serkin_6 265 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00295 545 SUPERFAMILY Protein kinase-like (PK-like) 273 523 IPR011009 -
Cme01g00295 545 Pfam Ankyrin repeats (3 copies) 152 237 IPR002110 GO:0005515
Cme01g00295 545 Pfam Protein tyrosine and serine/threonine kinase 273 522 IPR001245 GO:0004672|GO:0006468
Cme01g00295 545 ProSiteProfiles Ankyrin repeat region circular profile. 177 209 - -
Cme01g00295 545 ProSiteProfiles Protein kinase domain profile. 261 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00295 545 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Cme01g00295 545 CDD STKc_MAP3K-like 271 523 - -
Cme01g00295 545 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 104 543 - -
Cme01g00295 545 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 104 543 - -
Cme01g00295 545 Gene3D - 121 256 IPR036770 -
Cme01g00295 545 SUPERFAMILY Ankyrin repeat 132 248 IPR036770 -
Cme01g00295 545 SMART ANK_2a 210 239 IPR002110 GO:0005515
Cme01g00295 545 SMART ANK_2a 145 173 IPR002110 GO:0005515
Cme01g00295 545 SMART ANK_2a 177 206 IPR002110 GO:0005515
Cme01g00295 545 PIRSF ILK 80 544 - -
Cme01g00295 545 Gene3D Phosphorylase Kinase; domain 1 260 340 - -
Cme01g00295 545 Gene3D Transferase(Phosphotransferase) domain 1 341 539 - -
Cme01g00295 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00295 Cme-Chr1:2211582 Cme11g01546 Cme-Chr11:22963155 1.24E-136 dispersed
Cme02g01416 Cme-Chr2:20391052 Cme01g00295 Cme-Chr1:2211582 4.91E-59 transposed
Cme08g01429 Cme-Chr8:12686067 Cme01g00295 Cme-Chr1:2211582 4.89E-35 transposed
Cme12g00374 Cme-Chr12:5222317 Cme01g00295 Cme-Chr1:2211582 1.63E-34 transposed
Cme01g00295 Cme-Chr1:2211582 Cme12g01253 Cme-Chr12:20660326 2.25E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64593 PF07714 PK_Tyr_Ser-Thr 1.10E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00295 - - csv:101213574 959.133