Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00299 ATGGCTCCATTTTCATTCTCATTCTTGTTCTTATTACTCCTCCAGTCATCTTTTCTGTTCAACTGTCTGACCGCCAAACACCACGACGACCACCACCACCACCGTGTCCGGTCACCGAACTCGAACCCAAGACTTCATCAAGCATTCCTTGCTTTGCAAGCATGGAAAAAAGTCATTTACTCAGACCCAAAAAACCACACCACCAATTGGGTGGGGCCGTCAGTTTGCAATTACTTTGGAGTGTACTGTGCTCCATCTCTAGATGACCCAAAAATCCAAGTCGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAGCAGACCTTGCTCTGCTTCATCTCAATAGTAACAGATTCTGTGGCATTTTACCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTGGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCACCTTCCAAAATTAAAATATCTTGATCTTCGATTCAACGAATTTGAAGGTCCAATTCCCTCTGAACTCTTCAACAAATCCCTTGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCTTCTGTAATTGTTTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCAACTATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCAGGCTGTTTGCCACCAGAAATTGGGTTTTTGTATAAATTGAAGGTATTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTACCGTATAGTTTAACTGGGTTAGCACAATTAGAGCAATTGAATTTAGCCCATAACATGTTTAGTGGGAATTTATACGAAGGGATCTGTAGCCTTCCGAATTTAGAGAATGTGACGGTTTCTTACAATTACTTCTGTGAAGAAGTAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGTTTGCCGGAGAAGCCGTTTCAGAGGAGTAAAAAGGAATGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCCTGCGGTGGGGGCGGAGGAGGTTATGGTTCTAGTATTGCGGCGGTTCCGGCGCCGGCTCCGATGCCTATTTTTTCATCTTCTTCCGTTGTTGCCCCTTCCCACTTGTGA 1218 43.02 MAPFSFSFLFLLLLQSSFLFNCLTAKHHDDHHHHRVRSPNSNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLADLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLKYLDLRFNEFEGPIPSELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPPEIGFLYKLKVLDVSFNKLMGPLPYSLTGLAQLEQLNLAHNMFSGNLYEGICSLPNLENVTVSYNYFCEEVGICRNLTAKGIAFDDRRNCLPEKPFQRSKKECSAVVERPVDCFEHPCGGGGGGYGSSIAAVPAPAPMPIFSSSSVVAPSHL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2243543 2244793 - MELO3C018704.2.1 Cme01g00299 317275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00299 405 SUPERFAMILY L domain-like 48 323 - -
Cme01g00299 405 Gene3D Ribonuclease Inhibitor 48 212 IPR032675 -
Cme01g00299 405 Gene3D Ribonuclease Inhibitor 213 343 IPR032675 -
Cme01g00299 405 PANTHER EXTENSIN-LIKE PROTEIN 14 403 - -
Cme01g00299 405 Pfam Leucine rich repeat 119 176 IPR001611 GO:0005515
Cme01g00299 405 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00299 - - - csv:101218757 729.169
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00299 Cme-Chr1:2243543 Cme06g00581 Cme-Chr6:3740501 2.37E-137 dispersed
Cme01g00299 Cme-Chr1:2243543 Cme05g01968 Cme-Chr5:28235872 6.08E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g277 . . . . . . . . . . . . . . Sed05g1943 . . Bhi05g01965 Tan02g0208 Cmetu01g0388 Lac12g0736 Hepe02g0129 . . . . . . . . . . . . Cone12ag1471 . . . Cme01g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01698 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g01968 CCT 72 240 Leucine-rich Repeat extension Gene Families AT1G62440 72.2 2.6e-44 177.6
Cme02g01330 CCT 54 224 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 1.2e-41 168.7
Cme02g01330 CCT 18 396 Leucine-rich Repeat extension Gene Families AT4G13340 76.1 6.5e-69 259.2
Cme05g01968 CCT 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 72.2 2.0e-65 247.7
Cme06g00581 . 30 361 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 1.7e-40 164.9
Cme11g02177 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.7e-40 164.9
Cme11g02179 . 17 211 Leucine-rich Repeat extension Gene Families AT4G13340 57.4 2.2e-40 164.5
Cme11g02180 . 11 222 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 2.2e-40 164.5
Cme11g02178 . 38 225 Leucine-rich Repeat extension Gene Families AT4G13340 57.4 3.5e-38 157.1
Cme05g01968 CCT 47 419 Leucine-rich Repeat extension Gene Families AT3G24480 75.5 1.4e-75 280.8
Cme02g01330 CCT 27 391 Leucine-rich Repeat extension Gene Families AT3G24480 76.8 7.5e-74 275.0
Cme06g00581 . 30 361 Leucine-rich Repeat extension Gene Families AT3G24480 55.5 3.2e-40 163.3
Cme11g02180 . 23 397 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 4.1e-40 162.9
Cme11g02177 . 31 225 Leucine-rich Repeat extension Gene Families AT3G24480 52.6 1.2e-39 161.4
Cme11g02179 . 17 211 Leucine-rich Repeat extension Gene Families AT3G24480 52.6 1.2e-39 161.4
Cme11g02178 . 38 400 Leucine-rich Repeat extension Gene Families AT3G24480 51.5 5.0e-38 156.0
Cme06g00581 . 32 366 Leucine-rich Repeat extension Gene Families AT3G22800 71.7 6.4e-59 225.3
Cme01g00299 . 39 371 Leucine-rich Repeat extension Gene Families AT3G22800 60.8 2.5e-39 160.2
Cme02g01330 CCT 64 392 Leucine-rich Repeat extension Gene Families AT3G22800 62.8 9.7e-39 158.3
Cme06g00581 . 20 362 Leucine-rich Repeat extension Gene Families AT5G25550 65.5 1.9e-41 167.2
Cme02g01330 CCT 38 396 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 3.6e-40 162.9
Cme05g01968 CCT 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 60.8 6.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00299 Cme_Chr01 FPKM 4.704392 6.346323 9.596334 8.716255 8.454821 7.564083 8.078729 0.407918 0.260908 0.380711