Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00299 ATGGCTCCATTTTCATTCTCATTCTTGTTCTTATTACTCCTCCAGTCATCTTTTCTGTTCAACTGTCTGACCGCCAAACACCACGACGACCACCACCACCACCGTGTCCGGTCACCGAACTCGAACCCAAGACTTCATCAAGCATTCCTTGCTTTGCAAGCATGGAAAAAAGTCATTTACTCAGACCCAAAAAACCACACCACCAATTGGGTGGGGCCGTCAGTTTGCAATTACTTTGGAGTGTACTGTGCTCCATCTCTAGATGACCCAAAAATCCAAGTCGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAGCAGACCTTGCTCTGCTTCATCTCAATAGTAACAGATTCTGTGGCATTTTACCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTGGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCACCTTCCAAAATTAAAATATCTTGATCTTCGATTCAACGAATTTGAAGGTCCAATTCCCTCTGAACTCTTCAACAAATCCCTTGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCTTCTGTAATTGTTTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCAACTATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCAGGCTGTTTGCCACCAGAAATTGGGTTTTTGTATAAATTGAAGGTATTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTACCGTATAGTTTAACTGGGTTAGCACAATTAGAGCAATTGAATTTAGCCCATAACATGTTTAGTGGGAATTTATACGAAGGGATCTGTAGCCTTCCGAATTTAGAGAATGTGACGGTTTCTTACAATTACTTCTGTGAAGAAGTAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGTTTGCCGGAGAAGCCGTTTCAGAGGAGTAAAAAGGAATGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCCTGCGGTGGGGGCGGAGGAGGTTATGGTTCTAGTATTGCGGCGGTTCCGGCGCCGGCTCCGATGCCTATTTTTTCATCTTCTTCCGTTGTTGCCCCTTCCCACTTGTGA 1218 43.02 MAPFSFSFLFLLLLQSSFLFNCLTAKHHDDHHHHRVRSPNSNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLADLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLKYLDLRFNEFEGPIPSELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPPEIGFLYKLKVLDVSFNKLMGPLPYSLTGLAQLEQLNLAHNMFSGNLYEGICSLPNLENVTVSYNYFCEEVGICRNLTAKGIAFDDRRNCLPEKPFQRSKKECSAVVERPVDCFEHPCGGGGGGYGSSIAAVPAPAPMPIFSSSSVVAPSHL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2243543 2244793 - MELO3C018704.2.1 Cme01g00299 317275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00299 405 SUPERFAMILY L domain-like 48 323 - -
Cme01g00299 405 Gene3D Ribonuclease Inhibitor 48 212 IPR032675 -
Cme01g00299 405 Gene3D Ribonuclease Inhibitor 213 343 IPR032675 -
Cme01g00299 405 PANTHER EXTENSIN-LIKE PROTEIN 14 403 - -
Cme01g00299 405 Pfam Leucine rich repeat 119 176 IPR001611 GO:0005515
Cme01g00299 405 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00299 Cme-Chr1:2243543 Cme06g00581 Cme-Chr6:3740501 2.37E-137 dispersed
Cme01g00299 Cme-Chr1:2243543 Cme05g01968 Cme-Chr5:28235872 6.08E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00299 - - csv:101218757 729.169