Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00304 ATGAGCAGTGTTTGTGCCGATCAACAACACAAATTTCCATTTCCATTTCCATTTCACTCTTCTTCTTCTTCTTCTTCTTCGTGTTCTTCTTCTTTTCTTCACGACATTAACCTTCCGCCCAGGAAGCTTCTTACTGCTGTGAGACGAGAAAACGTTAACGGAGACATGTGTTCTGATTCACCGCGATTTTCGTTTGCTGTTGAATCACTTTTGCAGAAATTTTTGCCGTTTAATGGTGAGGATAAATCGGAGGAAGATGGAGATCCGTATTCTTCAGATCATTTTCGGATGTATGAGTTTAAGGTAAGACGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCACATCCTGGAGAGAAGGCACGACGGAGAGATCCTCGTCGGTTTCATTACTCTGGTACCATGTGTCCGGAGTTTCGTCGCGGCGGGTGTGGTCGTGGTGATGGATGCGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCGGCTAGGTATCGGACGGAAGCTTGTAAAGATGGAAAGAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCACCTCGTGAGCTTCGTCTTTTGCCTCCTGTCAGTAATTACCAAAGCGGCTCTTGTTCTTCGCCGAATAATAAACGAAGTTCTTCTTCTCTTAGATCTGCCTCTACTGCTTCTGCTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCGCTACTTCCTCACCGACTTCTACGCTTTTCGGAATGTCTCACCTATCTCCGCCGCACTCTCCACCGCACTCCCCGGGAAAACCTATAAACGGATTTTCTCCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTCTGAGCTATAAAGATGCACTGACTGAGCTCATGAGCTCAATCGAATCTATGAATATGGATGACGCCAATGCCACTTTAGCCGCCGCTGCCGCCGCCGCCACTGCCGCGGCTTCCGGTCCAAGACAAACAATTCCTTGGATCGATGTTTCGTCTCTCAACAACGAAGACCAACTTCAGTTTGTTCTCTCACCTTCTACTCCAAATGTCTCCACCGCGTCAGTGAATTTTTCCGTTGATCAGAACAACAATGGATGGGCCTCCGCCTCCGATCCGGATCTGGGATGGGTTAATGATCTGCTGATGTAA 1179 46.99 MSSVCADQQHKFPFPFPFHSSSSSSSSCSSSFLHDINLPPRKLLTAVRRENVNGDMCSDSPRFSFAVESLLQKFLPFNGEDKSEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNYQSGSCSSPNNKRSSSSLRSASTASASNHCCLFCHCGGAAATSSPTSTLFGMSHLSPPHSPPHSPGKPINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNMDDANATLAAAAAAATAAASGPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSTASVNFSVDQNNNGWASASDPDLGWVNDLLM 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2271097 2272275 + MELO3C018709.2.1 Cme01g00304 317280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00304 392 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872
Cme01g00304 392 PANTHER UNKEMPT FAMILY MEMBER 53 391 IPR045234 -
Cme01g00304 392 Gene3D - 134 197 - -
Cme01g00304 392 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Cme01g00304 392 SMART c3hfinal6 169 192 IPR000571 GO:0046872
Cme01g00304 392 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 53 391 - -
Cme01g00304 392 MobiDBLite consensus disorder prediction 203 222 - -
Cme01g00304 392 MobiDBLite consensus disorder prediction 255 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00304 Cme-Chr1:2271097 Cme04g02194 Cme-Chr4:29184502 2.99E-55 dispersed
Cme01g00304 Cme-Chr1:2271097 Cme02g00207 Cme-Chr2:1614273 3.08E-65 transposed
Cme01g00304 Cme-Chr1:2271097 Cme07g00245 Cme-Chr7:1573011 1.42E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40695 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00304 K23047 - csv:101211149 641.343