Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00305 ATGAAGCGTTATGTTTACATCAACGACAACGAACCATCAAATGATCTTTATTGCGATAACCGCATTTCGAACCGGAAATACACATTATTGAACTTTCTCCCAAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATATTTTTTGTTAATTGCGTGCCTACAGTTGTGGCCACTTATAACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTCATTTTTGCCGTGTCGGCAACAAAAGAGGCGTGGGATGATTATAATAGATATTTGTCAGACAAAAAAGCAAATGAGAAGGAAGTTTGGGTTGTGAAGCAGGGTACCAGAAAAATTATTCAAGCACAAGATATTCATGTTGGTAACTTGGTATGGCTCAGGGAGAATGATGAAGTGCCTTCTGATCTTGTTTTGATTGGTACATCTGATCCTCAAGGAATTTGCTATGTAGAGACATCTGCCCTTGATGGAGAAACTGACTTGAAGACAAGGGTCATACCCTCAGCTTGCATGGGAATCGATTTTGATCTGTTAAACAAGATCAAGGGAGTTATCGAGTGTCCTAAACCAGATAAGGATATTAGAAGATTTGATGCAAACATTCGGTTATTTCCTCCTTTTATCGACAATGATGTGTGTCCTTTAACAATAAAAAACACAATTCTTCAGTCATGTTACTTGCGGAACACAGATTGGGTCTGTGGAGTAGCTGTCTACACAGGCAATGAAACCAAGCTTGGAATGAGCAGGGGTGTCCCAGAACCAAAACTTACAGCTATGGATGCAATGATCGACAAGTTAACTGGTGCTATATTTGTTTTCCAACTTGTGGTTGTTGTTGTTCTGGGTATAGCTGGCAATGTTTGGAAGGATTCTGAAGCTCGCAAGCTATGGTATGTGCAACATCCAGAGGAAGGCCCATGGTATGAGCTTTTGGTTATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATCATGATACCTATTTCAATTAAGGTATCTCTGGATCTTGTTAAGAGCTTGTATGCAAAATTTATTGATTGGGACTATGATATGGTTGACTGTGAGAGTGGTATTCCTTCCCATGCTACGAATACAGCAATAAGTGAGGACCTGGGTCAAGTTGAATACATTTTGACAGATAAAACCGGTACTCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTATCAATGGCATTTTTTATGGAAATGAAAATGGAGATGCCTTGAAAGATAAAAAATTGGTCAATGCCATTGCAAACAGCTCTCCGGATGTTTTAAGATTTCTCACAATTATGGCAATATGTAATACAGTGGTGCCTACGAAAAGCAAAAGTGGAAATATCTTGTACAAGGCACAGTCACAGGATGAGGATGCTCTTGTGAATGCTGCTGCTTATTTGCATATGGTATTTGTCAATAAGAGTGCTAATATTCTTGAAATTCAGTTTAATGGAATGCTGAATAGATATGAGCTCCTCGATACTCTGGAATTCACATCTGAACGAAAAAGAATGTCTGTGGTCGTTAAAGATTGTCAGAATGGGAAGATTGTTCTCCTGTCTAAAGGAGCAGATGAAGCTATACTTCCTTATGCTTATGCGGGCCAGCAAACAAGAACATTTATTGAAGCCGTGGATCAATATGCACAACTGGGTCTCCGCACATTATGTTTGGCTTGGCGTGAACTGGAGGAAGAGGAGTATCGAGAATGGGCTTTTATGTTTAAGGAGGCTAATAGCACACTGGTTGACAGGGAGTGGAGGTTAGCTGAAGTTTGTCAAAGATTAGAGCGAAATTTTGAAGTCCTTGGAGTTACTGCTATAGAAGATAGGCTACAGGATGGCGTCCCTGAAACAATTGAAACATTGAGAAGAGCAGGAATAAATTTCTGGATGCTGACCGGAGACAAGCAGAACACTGCCATTCAGATAGCTCTTTTATGCAACTTTATTTCACCAGAGCCCAAAGGACAGTTATTATTAATAGATGGAAAAACGGAGGATGAAGTTTGCAGAAGTTTGGAGAGAGTTGTCCTAACTATGAGGACCACAACCTCAGAGCCCAAGGATGTTGCTTTTGTTGTTGATGGCTGGGCTCTTGAAATTGCTCTCAAGAATTATCGTAGGGCTTTCACTGAATTAGCAATACTATCAAGAACTGCAATATGTTGTCGTGTGACACCATCACAGAAGGCTCAGCTTGTAGAACTCTTAAAATCGTGTGATTATAGAACACTGGCAATTGGAGATGGTGGGAATGATGTGAGGATGATACAGCAAGCTGATATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAGGCAGCCAGGGCAGCTGATTATAGTATTGGAAAGTTCAGGTTTCTGAAAAGATTGATTCTAGTTCATGGACGATACTCGTACAACCGTACAGCATTCTTGTCGCAATATTCATTCTATAAATCCTTGTTGATATGTTTTATCCAGATCTCTTTCTCTTTCATATCAGGTGTCTCTGGGACCAGTCTCTTTAATTCTGTTAGCCTGATGGCTTACAATGTTTTCTATACTAGTATTCCAGTATTAGTTAGCGTTCTTGACAAAGATCTCAGTGAAGAAACGGTGATGCAACATCCTCAGATTTTGTTTTACTGCCAAGCTGGGAGGATTTTAAATCCCAGCACATTTGCTGGATGGTTTGGTCGATCTCTATTTCATGCTGTTGTCGTGTTTGTAATTAGCATACATGCCTACGCTAATGAAAAGAGCGAAATGGTGGAAGTCTCAATGGTGGCACTATCTGGGTGCATTTGGTTACAAGCTTTTGTAGTGACTTTGGAGACCAATTCATTCACAATATTGCAGCATCTTGCCATATGGGGGAATTTAGCTGCATTTTACGTAATCAATTGGATCTTCAGCGCCATTCCTTCATCGGGAATGTACACAATCATGTTTCGCTTATGCGGACAACCTTCATATTGGATAACCATATTTCTAATAGTAGGAGTTGGGATGGGCCCACTTTTAGCAATCAAATACTTCAGATATACATACACACCAAGCAAAATCAACACACTTCAACAAGCTGAACGTTTGGGTGGGCCGATTCTGTCGCTAAAAAACATCGAGCATCAGCCTCGGCCCATTGAGAAAGAAGTTTCTCCAATCTCAATTACTCAGCCCAAAAATAGAAATACAGTTTACGAACCTTTGTTATCAGACTCTCCAACTGCCACTCGAAGATCTCTTGCTTCTTCTTCTTCCTCCTTTGATTTCTTTCAGACACCCCCAAGTAGTTATTCAAGAAATAAGGATAATTAG 3309 40.28 MKRYVYINDNEPSNDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVKQGTRKIIQAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICYVETSALDGETDLKTRVIPSACMGIDFDLLNKIKGVIECPKPDKDIRRFDANIRLFPPFIDNDVCPLTIKNTILQSCYLRNTDWVCGVAVYTGNETKLGMSRGVPEPKLTAMDAMIDKLTGAIFVFQLVVVVVLGIAGNVWKDSEARKLWYVQHPEEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDYDMVDCESGIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCINGIFYGNENGDALKDKKLVNAIANSSPDVLRFLTIMAICNTVVPTKSKSGNILYKAQSQDEDALVNAAAYLHMVFVNKSANILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNGKIVLLSKGADEAILPYAYAGQQTRTFIEAVDQYAQLGLRTLCLAWRELEEEEYREWAFMFKEANSTLVDREWRLAEVCQRLERNFEVLGVTAIEDRLQDGVPETIETLRRAGINFWMLTGDKQNTAIQIALLCNFISPEPKGQLLLIDGKTEDEVCRSLERVVLTMRTTTSEPKDVAFVVDGWALEIALKNYRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQISFSFISGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRILNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEVSMVALSGCIWLQAFVVTLETNSFTILQHLAIWGNLAAFYVINWIFSAIPSSGMYTIMFRLCGQPSYWITIFLIVGVGMGPLLAIKYFRYTYTPSKINTLQQAERLGGPILSLKNIEHQPRPIEKEVSPISITQPKNRNTVYEPLLSDSPTATRRSLASSSSSFDFFQTPPSSYSRNKDN 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2276988 2287835 - MELO3C018710.2.1 Cme01g00305 317281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00305 1102 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Cme01g00305 1102 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Cme01g00305 1102 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Cme01g00305 1102 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Cme01g00305 1102 Pfam Cation transport ATPase (P-type) 436 532 - -
Cme01g00305 1102 Gene3D - 602 790 IPR023214 -
Cme01g00305 1102 Gene3D - 75 251 - -
Cme01g00305 1102 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme01g00305 1102 Pfam E1-E2 ATPase 99 293 - -
Cme01g00305 1102 SUPERFAMILY HAD-like 374 805 IPR036412 -
Cme01g00305 1102 SFLD C1.7: P-type atpase like 362 801 - -
Cme01g00305 1102 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 422 1023 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cme01g00305 1102 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Cme01g00305 1102 Gene3D - 445 581 IPR023299 GO:0000166
Cme01g00305 1102 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 385 1099 - -
Cme01g00305 1102 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 12 330 - -
Cme01g00305 1102 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 1016 IPR023298 -
Cme01g00305 1102 SFLD p-type atpase 362 801 IPR044492 -
Cme01g00305 1102 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Cme01g00305 1102 MobiDBLite consensus disorder prediction 1058 1102 - -
Cme01g00305 1102 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Cme01g00305 1102 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 12 330 - -
Cme01g00305 1102 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 385 1099 - -
Cme01g00305 1102 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166
Cme01g00305 1102 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 1017 IPR032630 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00305 Cme-Chr1:2276988 Cme08g02098 Cme-Chr8:26574399 0 dispersed
Cme12g01907 Cme-Chr12:25173585 Cme01g00305 Cme-Chr1:2276988 1.02E-23 dispersed
Cme01g00305 Cme-Chr1:2276988 Cme10g00310 Cme-Chr10:2035551 7.52E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00305 K01530 - csv:101210900 2114.73