Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00311 ATGATTTCGAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAAGAAGCGATTTCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTCGATGATGATCAAGCCTACAGTGTTACATCTGAAAACCCGTCCTCAATTTCGTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAACGAAGGGAGGATGATAATTCATGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCAGAAGATATGGAGATTCTCTATGTTGGTTCGTTGAAAGTCGATATCCAACCAGAAGAACAAGATGAGGTCTCCCAGATTTTGTTGGAGAGATTTAGGTGTATTCCTGCATTTTTGCCTCCTCATATTTTGGAGAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGTTGCCATATTCTGCTGATCAGAAGGGTCGATTTGATCGCTCCATGTGGGAAGCTTATGTATCCGCAAATAAGTTATTTTTCCAGAAAGTAGTCGAGGTCATCAACCCAGATGATGACTATATCTGGATTCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGATTCCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGGTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTACGGCAGAACGATTGGGATAAAAATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCGGTAATGAAACTGGCAGATGAGGATGCTAAGACTAGGGAACTCACACAGCAATTTGCAGGGAAGACGGTGTTGCTTGGTGTTGATGATTTGGACATTTTCAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAGTGGATAGGAAAGGCTGTACTTATCCAAATTGTAAATCCAGCCAGAGGTAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGTAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTATGAGCCAATAGTACTTCTCGACAGGCATGTGCCAATCACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTAACTGCTGTTAGAGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTCCCAAAAATGTTTGAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCTGAATTTATTGGGTGCTCTCCATCACTGAGTGGAGCATTTCGTGTTAATCCATGGAATGTGGAAAAGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGGCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTACGTTGCCACACACGACGTCGCTTATTGGTCTCGTAGTTTCTTGCAAGACATGGAGAGAACTTGCTCAGATCATTTCAGGAGAAGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAACTTCAGAAAACTCTCAGTAGATGCCATTGTATCATCTTACAGTAGGGCCGAAAGTCGGGCCATTCTGTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAGTCACCTAGTGCGCAGGTTATCTCTATCCTTAACACGCTTTGTGCAGATGCAAAAAACGTGGTCTTCATTGTGAGTGGACGAGGGAGAGACAGCTTAAGCAAGTGGTTTTGTCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTAAGGCAGTCACAAAACGAAGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCACATTGCCGAGCCTGTTATGAAATTATATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTTTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAGATGTTGGATCATTTAGAAAGTGTTTTGGCCAACGAACCGGTTGCAGTCAAAAGCGGCCAATTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCCTTGTGGCTGAAAAGATCTTTTCATCAATGGCAGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCAGATGAGGACATGTTTGAAATAATTGGTAATGCATTGTCCAGTAACATTCTTTCTCCAACGACGTCAGTTTTTGCCTGCACTGTTGGACAAAAACCAAGCAAAGCCAAATATTATTTAGATGACACAGCCGAAGTAATAAGCATGCTTGAGTACCTGGCTGAAGCTTCTAGTCCATTACCATCCTCCGATGATGAAGAAGGTGAAAATGCTTCTTGA 2571 42.05 MISRSYTNLLDLASGNFPAMEVKKKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEILYVGSLKVDIQPEEQDEVSQILLERFRCIPAFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWIGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVEKTAEALNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSAQVISILNTLCADAKNVVFIVSGRGRDSLSKWFCPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMHIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2318897 2323582 - MELO3C018715.2.1 Cme01g00311 317287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00311 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cme01g00311 856 Gene3D Glycogen Phosphorylase B; 314 527 - -
Cme01g00311 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Cme01g00311 856 Gene3D Glycogen Phosphorylase B; 53 313 - -
Cme01g00311 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Cme01g00311 856 Gene3D - 718 850 IPR023214 -
Cme01g00311 856 Gene3D - 589 691 IPR023214 -
Cme01g00311 856 CDD HAD_TPP 591 830 - -
Cme01g00311 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Cme01g00311 856 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 796 IPR006379 -
Cme01g00311 856 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 850 - -
Cme01g00311 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 850 IPR001830 GO:0003824|GO:0005992
Cme01g00311 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
Cme01g00311 856 TIGRFAM T6PP: trehalose-phosphatase 588 838 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00311 Cme-Chr1:2318897 Cme08g00207 Cme-Chr8:1392770 0 dispersed
Cme01g00311 Cme-Chr1:2318897 Cme10g00508 Cme-Chr10:3271116 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00311 K16055 - csv:101209914 1717.59