Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00313 ATGGACCGCCGTGTTCGTACAAACCCATTCCTCTCCGAACAGGAAGATCCCGAACCCACGTCCGACGACGGCTTACCCGAATCACCCTCCGACGCCAATGACTCAAAACCCACCGCTGCTCCACCTCCTAAAAAGAGTAGAAGGGGAGTGCAGAAGAGAGTGGTGTCCGTACCGATCGCTGACGTGGAAGGATCTAGGAGCAAAGGGGAAGCATATCCACCGTCCGATTCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCGAGGGGATATTATCGATGTAGTAGTTCCAAGGGATGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGATCCCACCAAGCTCGTTATTACCTACGCCTTCGACCACAACCACCAACTCCCGGTCACCAAATCTCACCACCACCACCACAATTCCTCCCCGTCCTCCGCCGTGGTCGCCGCGGCATCTGCCGGAACGGACTCTCCCTCGCCAGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGACAACACCAACGCGGCTCCGTCGTCACCGGCGGCGAAGTTTGAGGAGGTGGCTGCGGTTTTCGCGAGTCAGCCGGAGCTGGAACTCGGGGGCGACTCGCTGATGATAAAACCATGCATCGGAGATTTCGGGTGGTTGGGTGAGGTGGCATACGACAGAATCCTGGAGGGCCCGATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACAAGAGGAGATGACGAGGAGGAGTCGTTATTTGCGGATCTTGGGGAATTACCCGAAGGATCGGTGGTTTTCGGCCGACGGCGAACGGTCCAACCGGACGGACCGAATCGGACATGTGGCACAGTTTTAGACTGCTAG 894 57.16 MDRRVRTNPFLSEQEDPEPTSDDGLPESPSDANDSKPTAAPPPKKSRRGVQKRVVSVPIADVEGSRSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPVTKSHHHHHNSSPSSAVVAAASAGTDSPSPGSTTTSSSTSSGDNTNAAPSSPAAKFEEVAAVFASQPELELGGDSLMIKPCIGDFGWLGEVAYDRILEGPICGGGDIFDDADVMVLSTRGDDEEESLFADLGELPEGSVVFGRRRTVQPDGPNRTCGTVLDC 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2333970 2336534 - MELO3C018717.2.1 Cme01g00313 317289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00313 297 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00313 297 PANTHER OS01G0750100 PROTEIN 22 281 - -
Cme01g00313 297 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 22 281 IPR044810 GO:0003700
Cme01g00313 297 MobiDBLite consensus disorder prediction 136 187 - -
Cme01g00313 297 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00313 297 Gene3D WRKY domain 61 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g00313 297 MobiDBLite consensus disorder prediction 146 186 - -
Cme01g00313 297 MobiDBLite consensus disorder prediction 1 114 - -
Cme01g00313 297 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00313 297 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00313 Cme-Chr1:2333970 Cme08g00057 Cme-Chr8:449728 1.04E-35 dispersed
Cme01g00313 Cme-Chr1:2333970 Cme12g01269 Cme-Chr12:20787454 4.21E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40696 PF03106 WRKY 1.10E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00313 - - csv:101209422 513.842