Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00340 ATGGAATATGATAATGTTGCTCAGCTTCCAAACCGTACCACAGCTTCGCATTGGCTCCCGGCCACCGCCACTTGGTACGGCAGCCCAGAAGGCGACGGCAGCGACGGTGGGGCATGTGGGTACGGTAGTTTGGTGGATGTGAAGCCATTCAAAGCAAGAGTAGGAGCGGTGAGTCCAATCCTATTCAAGGACGGGGAAGGGTGTGGTGCGTGCTACAAAGTTCGGTGCTTGGATCGAGCCATATGCGCCAGACGGGCCGTTACCATCATAGTGACCGACGAGTGTCCAGGTGGGTATTGCTCCAATGGCCGGACTCACTTCGACCTGAGTGGTGCCGCCTTCGGACGTATGGCGGTGGCTGGCGCGGGCAGCCGTCTCCGAGACCGAGGGGAGTTGACCGTCGCATACAGAAGGACTCCATGTAGGTATAGAGGAAAGAATATAGCGTTCCATGTGAATGAAGGTTCGACAGATCATTGGCTTTCGCTTTTGGTGGAGTTCGAGGATGGAGATGGAGATATTGGTTCTATGCAAATCAGACAAGCAAACTCAAAAGAGTGGATGGAAATGGCACATGTGTGGGGTGCAACATGGTGCATAAATGGAGGGCCTTTAAAGGGTCCATTCTCAGTGAAGTTAACCACATTATCCACAGCTAAAACTCTCTCAGCCAGAGATGTTATTCCAAGGAATTGGTCTCCAAAGGCAACTTACACTTCTCGCTTGAACTTCTCCTAA 738 52.03 MEYDNVAQLPNRTTASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICARRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVAYRRTPCRYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIRQANSKEWMEMAHVWGATWCINGGPLKGPFSVKLTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2543498 2545870 + MELO3C018743.2.1 Cme01g00340 317316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00340 245 PANTHER EXPANSIN-B3 15 244 - -
Cme01g00340 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 240 IPR007117 -
Cme01g00340 245 PANTHER EXPANSIN-B17 15 244 - -
Cme01g00340 245 SUPERFAMILY PHL pollen allergen 146 240 IPR036749 -
Cme01g00340 245 Pfam Lytic transglycolase 56 123 IPR009009 -
Cme01g00340 245 PRINTS Major pollen allergen Lol pI signature 56 67 IPR005795 GO:0005576|GO:0019953
Cme01g00340 245 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Cme01g00340 245 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Cme01g00340 245 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Cme01g00340 245 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Cme01g00340 245 PRINTS Major pollen allergen Lol pI signature 96 111 IPR005795 GO:0005576|GO:0019953
Cme01g00340 245 Gene3D - 5 142 IPR036908 -
Cme01g00340 245 SMART dpbb_1 54 136 IPR007112 -
Cme01g00340 245 Gene3D - 143 245 IPR036749 -
Cme01g00340 245 SUPERFAMILY Barwin-like endoglucanases 11 145 IPR036908 -
Cme01g00340 245 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Cme01g00340 245 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Cme01g00340 245 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Cme01g00340 245 PRINTS Expansin/Lol pI family signature 35 53 IPR007118 GO:0005576
Cme01g00340 245 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cme01g00340 245 PRINTS Expansin/Lol pI family signature 17 32 IPR007118 GO:0005576
Cme01g00340 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 36 146 IPR007112 -
Cme01g00340 245 Pfam Expansin C-terminal domain 148 229 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00340 Cme11g01184 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00340 Cme-Chr1:2543498 Cme03g01526 Cme-Chr3:24439410 4.22E-37 dispersed
Cme06g00032 Cme-Chr6:232574 Cme01g00340 Cme-Chr1:2543498 1.38E-78 transposed
Cme01g00340 Cme-Chr1:2543498 Cme11g01184 Cme-Chr11:18004777 1.05E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00340 K20628 - csv:101205324 481.87