Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00341 ATGGCGGCGGAGGATAAGAGAACAGGGAAACTGAAGATGGTTATCGATGCAAAGAATCCAGAGAAGAAGATTGAGAAAGGGAAAAACGTTGCAGCAGTTAGCTTGGAGAGGCAACAATGGAAGCCAGTTTTAGATGATGCTTTCTTGTCTAGAAGACCTCTCAAGAAAATCTGCAGTTCAAATTTTCATAACCCATTTCTTCATTCCCCTGTTTCTCTTTCTCCCCCTTCTTCTAAAATCCAATTTCCTTTCGATTTCGAAGCATCTCAACAATCATCAATAACAACAACAACAACAACACAGTTCAATTCTCAACATCCGATTTCTTCCTCCTCTTCTTCTTCCTCTCCCTTTACGTCGTTCGGGTCTCCGGAGCAACAGATGATTTCTTTTAGTTCCAACCAACAACAGGGATTTGGCTTTCCGCCATACTTCGTCAACGGCGACCCGGTGGCATCGCAGCAGAGACTTTTCAAGTACTGTAGCGATGCGTTTCATTTGAGTCCAAGAGGAAGAGCTATGATGATGAGTAGATTCGGCCCGGATGGAGGTAATTTGTTTCGGCCGCCATTGCAGCCCATAAGTGCCACTAAGCTTTACAGAGGAGTTCGACAGCGGCATTGGGGGAAATGGGTGGCTGAAATTCGTCTCCCTCGTAACCGAACTCGTCTTTGGCTCGGCACTTTCGACACCGCCGAAGACGCTGCCATGGCTTACGATCGCGAAGCCTTCAAATTACGAGGCGAAAATGCTCGACTCAATTTCCCTGATCGTTTCATCAAGAAAGACATTCCAAAAACAGAGGCGGAAACAGAGCTTACAATTCCAATAACAGAGGAAGCTCATCCAGAAAGCGTTATCGTTCTTCAGCCGCCAGAAGAAGAAAAACCAAATAACGACTTGACGGAGAGCGGCAGCTGCGCATCTGAGCAGACAGAGATGGTATGGGGAGAAATGGAAGAGGCTTGGTTTAATGCGATTCCGGCCGGTTGGGGTCCAGGAAGCGCTGTTTGGGATAATCTAGACCCAACAAACAATTTAGTTCTTCAATCACAAATCCCATTTGGTTCTTCAAATGAGCATCAGATGAACGAATCCAACGACAATCAGAACAAGATTGAAACTTCTGAATCGGCTTCGTCTTCGTCTACGTCTGCTCCGATGAAGCTTTTCTTATGGAAAGATCAAGATTGA 1194 45.73 MAAEDKRTGKLKMVIDAKNPEKKIEKGKNVAAVSLERQQWKPVLDDAFLSRRPLKKICSSNFHNPFLHSPVSLSPPSSKIQFPFDFEASQQSSITTTTTTQFNSQHPISSSSSSSSPFTSFGSPEQQMISFSSNQQQGFGFPPYFVNGDPVASQQRLFKYCSDAFHLSPRGRAMMMSRFGPDGGNLFRPPLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPDRFIKKDIPKTEAETELTIPITEEAHPESVIVLQPPEEEKPNNDLTESGSCASEQTEMVWGEMEEAWFNAIPAGWGPGSAVWDNLDPTNNLVLQSQIPFGSSNEHQMNESNDNQNKIETSESASSSSTSAPMKLFLWKDQD 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2550906 2552460 - MELO3C018744.2.1 Cme01g00341 317317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00341 397 CDD AP2 198 257 IPR001471 GO:0003700|GO:0006355
Cme01g00341 397 ProSiteProfiles AP2/ERF domain profile. 199 256 IPR001471 GO:0003700|GO:0006355
Cme01g00341 397 MobiDBLite consensus disorder prediction 96 124 - -
Cme01g00341 397 MobiDBLite consensus disorder prediction 357 389 - -
Cme01g00341 397 Pfam AP2 domain 200 248 IPR001471 GO:0003700|GO:0006355
Cme01g00341 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 294 - -
Cme01g00341 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 294 394 - -
Cme01g00341 397 SUPERFAMILY DNA-binding domain 199 258 IPR016177 GO:0003677
Cme01g00341 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 294 394 - -
Cme01g00341 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 19 294 - -
Cme01g00341 397 SMART rav1_2 199 262 IPR001471 GO:0003700|GO:0006355
Cme01g00341 397 MobiDBLite consensus disorder prediction 357 397 - -
Cme01g00341 397 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700|GO:0006355
Cme01g00341 397 PRINTS Ethylene responsive element binding protein signature 222 238 IPR001471 GO:0003700|GO:0006355
Cme01g00341 397 Gene3D AP2/ERF domain 199 257 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00341 Cme-Chr1:2550906 Cme11g01164 Cme-Chr11:17652814 4.74E-63 dispersed
Cme01g00341 Cme-Chr1:2550906 Cme07g02122 Cme-Chr7:25838163 2.30E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40699 PF00847 AP2 2.50E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00341 - - csv:101205560 722.62