Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00348 ATGGGTGGGTGTGTCTCTACAAGCAGCCATAGTACATGTAGTAGCCAAAGCAATGGGGAATCAGTTTCTTCTTCATGCATGGGAATTGGATTTGTATGTCGAAAGCGAACAAAGAGAACATTCTCCGACCATGTTTATGCTCTTCAGAATCTTCCTTCAGCTCCTAACAGGATCTTCATGAATGGAAAAAGTCGTTCTTCTTGCATTTTCACTCAACAAGGTCGCAAGGGGATAAACCAGGATGCCATGGTTGTGTGGGAAGATTTCATGTCAGAGGACACAATCTTTTGTGGTGTGTTTGATGGACATGGACCTTATGGTCATCTCGTTGCTCGTAAAGTGAGGGATACATTGCCGATAAAGTTGCTGTCGTTCTTCCAGTCTCCTCAGCTGAAGCAAAATGACTCTGGGAAAACCTGTTTCCAGAGGAATTTGAAGACACCTCCAGATTGCGAGGATTCTGAGAAAGATGGTTTTGTAGAGGACTCACAGAATTCGGTATGGAAAGATGCATTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACATCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATTGGGGATTCAAGAGCAATCCTCGCTTCGAAGGACGCCAATGATTCCACTGTGGCAGTTCAATTAACCGTGGATCTTAAGCCAGATTTGCCGAGAGAAGCTGAAAGAATAAAACGGTGTAAAGGCAGGGTCTTTGCATTGCAGGATGAGCCAGAAGTGCCAAGGGTGTGGTTACCTTTTGATGATGCCCCCGGTTTAGCAATGGCTCGAGCATTTGGTGACTTTTGTTTGAAAGAATATGGGGTTATCTCTATACCTGAATTCTCTCATCGAACCCTAACCGATGCTGATCAGTTCATCGTTCTTGCATCAGATGGGGTGTGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTATCCTCAGCCCCAACCCGGGCATCAGCTGCGAGGTCCGTGGTGGACTCAGCTGCTCGTGAATGGAAACTCAAATACCCTACCTCGAAAATGGATGACTGTGCAGTCGTCTGCTTATTTTTGGATAGGAGGATGGACTCCGAATCTGACTGTGATGAACAAGCCTTCTCGTCTGCAACATTGCGTAGTAATCATTCGGGTACAGCTATTGAATCCGATGATGGCCAAAGGTCTGAGCCATGTTTGCAAAGGAATAACACTGTCAGATCATCTGAAGAAAACAAGGGATTACCTGTTGACGACGGGGAAATTGGCGATGCTGTACCTGCAGAAGATCAAAACTGGTTGGGTTTGGAAGGAGTCACTCGAGTGAACTCACTTGTTCAGCTTCCTAGATTTTCCGAGGAAAGGCCTGTGTCATAG 1416 45.41 MGGCVSTSSHSTCSSQSNGESVSSSCMGIGFVCRKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQNDSGKTCFQRNLKTPPDCEDSEKDGFVEDSQNSVWKDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRASAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDRRMDSESDCDEQAFSSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEENKGLPVDDGEIGDAVPAEDQNWLGLEGVTRVNSLVQLPRFSEERPVS 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2586841 2590462 + MELO3C018749.2.1 Cme01g00348 317324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00348 471 MobiDBLite consensus disorder prediction 393 443 - -
Cme01g00348 471 MobiDBLite consensus disorder prediction 1 24 - -
Cme01g00348 471 Gene3D - 56 375 IPR036457 -
Cme01g00348 471 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 459 - -
Cme01g00348 471 Pfam Protein phosphatase 2C 163 349 IPR001932 -
Cme01g00348 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
Cme01g00348 471 PANTHER ALPHABET, ISOFORM E-RELATED 1 459 - -
Cme01g00348 471 SUPERFAMILY PP2C-like 56 373 IPR036457 -
Cme01g00348 471 MobiDBLite consensus disorder prediction 393 424 - -
Cme01g00348 471 SMART PP2C_4 55 370 IPR001932 -
Cme01g00348 471 CDD PP2Cc 65 372 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00348 Cme-Chr1:2586841 Cme05g00950 Cme-Chr5:13176826 5.63E-148 dispersed
Cme01g00348 Cme-Chr1:2586841 Cme05g01581 Cme-Chr5:25027632 5.87E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00348 - - csv:101204594 928.317