Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00362 ATGACAATTTTCTCCTTCTTCACTAGAGCTTCCACAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGTACTACCCTCAGTGGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGGCGGTTCTATTGAAGAATCACCAAAAAAGAGAGTTGTGGTGCTTGGAACAGGATGGGCCGGTACCAGTTTTCTCAAGGATCTGGATGCTTCAAAATATGACGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCGGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCTTTAAGATCGATGCTGCTAACAAGAAGGTTTTCTGCCAGTCTCATGTTGACAATAACTTGGTTGGCAATAGGGAGTTTTCCTTAGAATATGACTATTTGGTAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGTTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGAGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTGGTTAACTTATATCCTTCGGTTAAAGATCTAGTGAAAATTTCAGTAATTCAATCTGGAGATCACATTTTGAATGCGTTTGATGAAAGAATTAGTTTATTTGCTGAACAAAAATTCCTAAGAGATGGCATCGATGTATACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTGAGATGAAGGTTAAATCAACTGGAGAATCCTGTTCGATGCCGCATGGACTAATTGTCTGGTCTACGGGTATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGGAAAATTATGGAAGATATTGCCACCATATTTAAAGCTGCAGACAAAGATAACTCTGGTACCCTGACAGTTGCAGAATTTCAAGATGTTCTAGATGATATTCTCATAAGGTATCCTCAAGTAGAAATATTTTTGAGGAGCAAACATCTCCGCGATGTAAAAGATCTCTTGAGAGATTCTCAGGGACATGAGAATGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCCGACACGCAGATGAAAAATTTGCCTGCCACCGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTCCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGTCCTCGACATTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGAGGAGAACAAGCTGCTGCTGAGCTTCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGATATCTAGTGGTATCAGATTGGACAAGAAAGTTTATATTTGGAAGAGATTCGAGCCGCATCTGA 1728 42.01 MTIFSFFTRASTAFHGSPAYSKLLLISTTLSGGGLLAYADSQSDVGGSIEESPKKRVVVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECFKIDAANKKVFCQSHVDNNLVGNREFSLEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISLFAEQKFLRDGIDVYTGCRVVSVSDKEIEMKVKSTGESCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIATIFKAADKDNSGTLTVAEFQDVLDDILIRYPQVEIFLRSKHLRDVKDLLRDSQGHENEIDIEGFKSALSHADTQMKNLPATAQVAAQQGAYLSRCFNRREHCTENPEGPRHFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2659948 2665215 + MELO3C018763.2.1 Cme01g00362 317338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00362 575 PANTHER NADH DEHYDROGENASE 45 575 IPR045024 GO:0003954|GO:0006116
Cme01g00362 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Cme01g00362 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Cme01g00362 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Cme01g00362 575 SUPERFAMILY EF-hand 330 459 IPR011992 -
Cme01g00362 575 SUPERFAMILY FAD/NAD(P)-binding domain 220 374 IPR036188 -
Cme01g00362 575 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 45 575 - -
Cme01g00362 575 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Cme01g00362 575 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 379 IPR023753 GO:0016491
Cme01g00362 575 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Cme01g00362 575 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Cme01g00362 575 Gene3D - 48 403 - -
Cme01g00362 575 Gene3D - 424 574 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00362 Cme11g01086 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00362 Cme-Chr1:2659948 Cme11g01389 Cme-Chr11:20660970 2.52E-70 dispersed
Cme10g00169 Cme-Chr10:1165548 Cme01g00362 Cme-Chr1:2659948 3.58E-06 transposed
Cme11g01086 Cme-Chr11:16008141 Cme01g00362 Cme-Chr1:2659948 0 transposed
Cme01g00362 Cme-Chr1:2659948 Cme12g01401 Cme-Chr12:21873153 0 wgd
Cme01g00362 Cme-Chr1:2659948 Cme08g00332 Cme-Chr8:2110295 8.05E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00362 K03885 - csv:101203130 1116.29