Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00411 ATGGCCATTACTCCAAAGCTTTTCTTCCTTCTCTTTTTGCAACTAATGTTTATATCATCTCTCTCGAACATCGTCGGAGCACAAGAGTTGGCAGTCGGGTTTTACCAGGATTGCTGCCCTGGGGTGGAGTATATCGTCGCCAAGACGGTTGCTCAATATGTTAAGAAACAACCATCAATAGCTGCTTCTTTGTTGAGGATGCATTTCCATGACTGCTTTGTTAGGGGATGTGATGGTTCAGTGCTGCTAAATTCTCTACCAAATAACCCAGCAGAGAAAGATGCCTTTCCCAACCTTAGTTTAAAAGGTTATAATGTTGTTGATGCCGTTAAAGCTGCCGTCGAAAAGCAATGTCCCGGCGTCGTTTCTTGTGCTGACATCCTTGCTTTGATAGCTCGTGATGCTGTTAGAATGAGTGGAGGCCCAGTTTGGAAAGTTCCAACGGGAAGAAGAGACGGAAGGGTATCAATCTCACGAGAAGCATTAATTAATCTGCCTCCTCCTTTCGCTAATATCTCATCTCTCAAATCAAGTTTCTTCTCCAAAGGTCTCTCCCTCAAAGATCTTGTCGTTTTATCCGGATCACATACAATCGGAGTCTCTCACTGTACCTCTTTCTCCAATCGCCTCTACAATTTCACCGGCAAAGGTGACGCTGATCCCAAACTAGACAAATACTACGCGATCGCACTCAAGAAAAAATGCAAACCAAATGACCAAAAGAAAATCGTCGAGATGGATCCTGGAAGCTTCAAGACCTTCGATCATAGTTATTACACTCTCGTTTCCAAGAGAAGAGGATTGTTCCAGTCTGATTCCGCTCTTCTCGACGATCCCGATACTAAAGCCTACGTTCAGCTTCAGGCTAGGACACGTGGCGCTACTTTCGCCGCCGATTTCGCTGAATCCATGATTAATATGGGGAACATCGGCGTTCTCACCGGTACCGACGGTGAAATTAGGCGCCGATGTGGTTTTGTTAACTGA 987 45.19 MAITPKLFFLLFLQLMFISSLSNIVGAQELAVGFYQDCCPGVEYIVAKTVAQYVKKQPSIAASLLRMHFHDCFVRGCDGSVLLNSLPNNPAEKDAFPNLSLKGYNVVDAVKAAVEKQCPGVVSCADILALIARDAVRMSGGPVWKVPTGRRDGRVSISREALINLPPPFANISSLKSSFFSKGLSLKDLVVLSGSHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYAIALKKKCKPNDQKKIVEMDPGSFKTFDHSYYTLVSKRRGLFQSDSALLDDPDTKAYVQLQARTRGATFAADFAESMINMGNIGVLTGTDGEIRRRCGFVN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2907773 2909858 - MELO3C018804.2.1 Cme01g00411 317387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00411 328 Gene3D - 33 328 - -
Cme01g00411 328 Pfam Peroxidase 46 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 CDD secretory_peroxidase 29 327 IPR033905 GO:0004601|GO:0042744
Cme01g00411 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cme01g00411 328 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 Gene3D Peroxidase, domain 2 166 307 - -
Cme01g00411 328 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 ProSiteProfiles Plant heme peroxidase family profile. 29 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PANTHER PEROXIDASE 25-RELATED 12 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme01g00411 328 PANTHER PEROXIDASE 12 327 - -
Cme01g00411 328 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Cme01g00411 328 SUPERFAMILY Heme-dependent peroxidases 30 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00411 Cme11g01126 CCT
Cme01g00411 Cme11g01126 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00411 Cme-Chr1:2907773 Cme01g02400 Cme-Chr1:32301346 2.68E-95 dispersed
Cme08g00959 Cme-Chr8:6309820 Cme01g00411 Cme-Chr1:2907773 5.65E-92 transposed
Cme11g01964 Cme-Chr11:27658964 Cme01g00411 Cme-Chr1:2907773 1.29E-100 transposed
Cme01g00411 Cme-Chr1:2907773 Cme11g00772 Cme-Chr11:9621554 5.44E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00411 K00430 - csv:101219177 579.326