Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00416 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGTCGTCCATGATCGGAAGAAATGGAAATGTTGGAATTTTTGGGTCCCCAGCCAGCCTTGTTCTTGGTCAGGAGCTACAAGGAATAGAAATGGGAGAAAATGAATATGGAAGAATGAGAGAAACAGAAGAGTTTGAAAGTGGAACAAAATCAAGTAGCGAGAATCATGAGGTTGGTTCCGGTGACGACCAACTCAATAACCAACGCCCCAACAAGAAAAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTTTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTAAGTAGGGAGTTGAATTTAGAGCCATTGCAAGTCAAGTTTTGGTTCCAAAACAAGAGAACTCAGATGAAGACACATCATGAGCGACATGAAAACACACAGCTCCGAACAGAAAATGAGAAGCTAAGAGCAGATAATATGAGATATAGAGAAGCTCTAAGTAATGCCACGTGTCCCAATTGTGGAGGTCCTACCGCCATTGGAGAGATGTCTTTTGATGAACATCATCTTAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGGATTTCAGCCATAGCAGCAAAATATGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCCACACCAATCCCTTCACGTCCTCTAGAAATTGGAATGGGGAGCTATGGAGGCCACGATTTGGGCCTCGGACCGGGAGGCGGGGACATGTTCGGGGCAGCGGACCTTCTAAGGACCATAAGCGCGCCATCAGAGGCGGACAAGCCGGTAATCATCGAGCTAGCGGTTGCAGCAATGGAGGAGCTGGTCAGAATGGCTCAGATGGGTGAGCCACTGTGGATGACAGGGGTTGATGGGTCAACGAATGAGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCAAGAGGAATTGGTCCTAAGCCATCAGGGTTTAGCTGTGAAGCTTCTCGTGCTACTGCTGTTGTCATTATGAATCATATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAATGGTCAACAATATTCACCGGGATTGTGTCAAGAGCTATGACATTAGAAGTATTATCAACTGGCGTCGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTGCAAGTGCCTTCTCCACTAGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTTGTTGACGTTTCCTTAGACAATTTACGCCCAGCTCCTGCTCTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATCCAAGAAATGCCCAATGGTTATTCTAAGGTTACATGGGTTGAGCATGTTGAGGTGGATGATCGTGGTGTCCACAGTTTATACAACCAGCTAGTTAGCTCTGGCCACGCGTTCGGCGCAAAGCGTTGGATTGCCACGTTGGATCGTCAGTGTGAACGACTCGCCAGCGCCATGGCCACCAGTATTATTCCTAATGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAGAGTATGTTGAAGCTGGCAGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCGACAACACACACTTGGACGACTCTGTCGGGAACCGGAGCTGACGACGTTCGAGTTATGACGAGAAAGAGCGTTGACGATCCCGGCAGACCATCCGGCATTGTCCTCAGCGCAGCCACTTCCTTTTGGCTTCCTCTTCCTCCTAACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGTGACACAGGCAATTGTGTTTCATTACTACGAGTTAACAGTGCAAATTCAAGCCAAAGTAACATGTTGATATTACAAGAAAGCAGCACAGATCAAACAGCCTCATTCGTGATATACGCGCCGGTGGACATTGTCTCAATCAACGTGGTGCTAAACGGCGGAGATCCGGATTATGTAGCTCTTCTGCCATCTGGATTTGCCATACTTCCCGACGGAAGCACGGCGTCAAGCGGGGGGGCCAATGGCGCGGGGGAACATGGGTCCGGTGGGTCGCTTTTAACGGTGGCGTTTCAGATATTGGTTGACTCGGTTCCCACAGCAAAATTATCTCTTGGGTCAGTTGCAACGGTCAACAATCTCATTGCATGCACGGTTGAGAGAATTAAAGCCTCTTTGTCATGTGACAATCCTTAA 2286 47.51 MPAGMMIPARNTASSMIGRNGNVGIFGSPASLVLGQELQGIEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNNQRPNKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTPIPSRPLEIGMGSYGGHDLGLGPGGGDMFGAADLLRTISAPSEADKPVIIELAVAAMEELVRMAQMGEPLWMTGVDGSTNELNEEEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTIFTGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCERLASAMATSIIPNGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPSGIVLSAATSFWLPLPPNRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGSTASSGGANGAGEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCDNP 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2932684 2938974 - MELO3C018809.2.1 Cme01g00416 317392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00416 761 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Cme01g00416 761 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Cme01g00416 761 SUPERFAMILY Homeodomain-like 68 141 IPR009057 -
Cme01g00416 761 Gene3D - 71 159 - -
Cme01g00416 761 SMART HOX_1 83 146 IPR001356 GO:0003677
Cme01g00416 761 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 47 758 - -
Cme01g00416 761 SUPERFAMILY Bet v1-like 518 753 - -
Cme01g00416 761 MobiDBLite consensus disorder prediction 64 78 - -
Cme01g00416 761 CDD homeodomain 85 143 IPR001356 GO:0003677
Cme01g00416 761 CDD START_ArGLABRA2_like 273 497 - -
Cme01g00416 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 47 758 IPR042160 -
Cme01g00416 761 MobiDBLite consensus disorder prediction 52 94 - -
Cme01g00416 761 Coils Coil 148 168 - -
Cme01g00416 761 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Cme01g00416 761 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Cme01g00416 761 Pfam START domain 279 498 IPR002913 GO:0008289
Cme01g00416 761 SMART START_1 278 498 IPR002913 GO:0008289
Cme01g00416 761 Gene3D - 311 495 IPR023393 -
Cme01g00416 761 SUPERFAMILY Bet v1-like 271 500 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00416 Cme11g00781 CCT
Cme01g00416 Cme11g00781 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00416 Cme-Chr1:2932684 Cme11g02549 Cme-Chr11:31886646 0 dispersed
Cme04g00182 Cme-Chr4:1356820 Cme01g00416 Cme-Chr1:2932684 3.65E-31 transposed
Cme04g00844 Cme-Chr4:10640836 Cme01g00416 Cme-Chr1:2932684 7.72E-118 transposed
Cme04g00956 Cme-Chr4:12834928 Cme01g00416 Cme-Chr1:2932684 1.96E-20 transposed
Cme10g00945 Cme-Chr10:7183532 Cme01g00416 Cme-Chr1:2932684 7.18E-26 transposed
Cme11g01800 Cme-Chr11:26163010 Cme01g00416 Cme-Chr1:2932684 1.97E-12 transposed
Cme01g00416 Cme-Chr1:2932684 Cme11g00781 Cme-Chr11:9888700 0 wgd
Cme01g00416 Cme-Chr1:2932684 Cme12g01470 Cme-Chr12:22385995 0 wgd
Cme01g00416 Cme-Chr1:2932684 Cme08g00387 Cme-Chr8:2409975 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40710 PF01852 START 3.40E-59 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00416 K09338 - csv:101219415 1456.04