Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00419 ATGGTTAATTTTGTTCCTCTGCCTCTGCTCTTTGTGTTTCATGCTTTCATATGGCTCTTTCACCTCACTCCTCCGATCTACTGCCAATTACCTTCTATCATAAACATCGCTGCCGTTTTTACTTTCGATTCCGTCATCGGAAGAGCTGCAAAGCCGGCCATGGAAGCTGCAATCTCCGATATAAACGCAGACCCCAATATCTTGAATGCCACAAAGCTTAACTTTTTCATGGAAGACTCTAATTGTAGTGGCTTCTTGGGCTCCGTTGGAGCTTTGCAGGTACTTGAGAAAGAGATTGTAGCCTTGATTGGCCCACAATCCTCAGTAGTGGCTCATGTGATTTCTCAGATTGTTAATGGTCTACAAATTCCTCAAGTATCTTATGCTGCCACTGATCCAACATTATCCACTTTGCAACTCCCTTATTTCCTCAGAACCACTATAAGCGACTCTTACCAAATGGCTGCCATGGCTGACTTGATTGATTACTATGGCTGGAAAGAAGTCATTGCTATATTTTTGGATGATGATTATGGTAGAAATGGGATATCTTTTCTCGGTGATGAACTTCAGAAGAAAATGTGTCGTATTTCCCATGCATTCCCTTTACCTTCTCTGGATAATCTTACTAAGATCACACAAATACTCGACAATTCTAAATTACTTGGTCCTCGAGTTTATGTAGTTCATGTAGGCCCTGATCCCCAATTAAGAATCTTCACTATTGCCCATAAGCTCGGTATGCTTTCCAGCAATTATGTTTGGTTCGCAACTGATTGGCTTTCCACAACTCTTGATTCTTCTTCACCAATAACTATTGGTGCTTCACTTGATATGCTTAATGGGATTGTTGGGTTGCGCCCTCATACTCCAGAGTCTAAAGGAAAGAGAGATTTGTGGAATCGGATAAGCAAAATGCAGCCAAAAGGTTTAACTAATTCTGCGTTGAATGTTTATGGACTGTATGCTTATGATTCAGTATGGATTGTTGCAAAGGCAGTGGATAAGTTTCTTAAAGAAAATGGGACTATCGTTACATTTTCACCCACAGGTAAAGTGTTTGGCTCTAATGAAAGTGGAATTCAATTGGGTAAAGTTAAAGTGTTTGATAGAGGGAGTGATTTACTTAGAATTCTTATGCAAACTGATTACAATGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAGTGTTGTTAATGGTAGCTATGATGTGATTAATATTAACCAAAGGAAAATGAAATTGGTGGGTCATTGGTCTAACGACTCAAGATTTCATTCTTACTTAGATCAGAAACTTGAGAATGTGGTATGGCCTGGTGGGAAGAAGGAGATACCAAGGGGATGGGTGATAGCAGATAGTGGAAAACCTTTGAGAATTGCTTTCCCAAGAAGAGCAAGCTTTGTTGATTTTGTAACTCAATTGAACAACACCAATATTGTTCAAGGATATGTTATTGATATTTTCAAAGAAGCTCTCAAGTTTGTTCCATATGAAGTTCCTTACAAGTTTGTGCCTTTTGGAGATGGTAAAGTTAATCCCAGTTATGATGAACTTGTTCAATCAGTTGCAAACAATGTGTTTGATGCAGCAGTTGGGGACATTGCAATCATTACGAACCGAACCAAAGTTGTTGATTTTTCTCAACCATATACCACAACAGGGCTGATCATAGTTGCACCAGTTGAAGATTCAAAATCAAGTGCTTGGGTGTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGCAACTGCAGGTTCCTTTGTGGTAATTGGTATTGTTATTTGGATGTTGGAGCATAGAATCAACGACCATTTTCGAGGTCCTCCAAAAAGACAGATTATCACAATGTGTTTGTTTAGCTTTTCAACTCTTTTCAAGGCAAATCAAGAAGCAACCATAAGCCCACTCTCACGGCTAGTGATGTTGGTGTGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACACTTCAACAACTTTGGTCTCCAATACGAGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTACGACTATCTCACACAAAGCCTTTTCATTCCAAGTTCAAGACTGCTGAGGTTGGACTCCCCTGAAGACTACGAGAAAGCACTGCGCCTTGGCCCAAAAGGAGGCGGCGTGGCGGCCATCATCGACGAACTTCCATACTTGGAGTTGTTTCTGTCAAATACGAAAGAATTTGGAATCATTGGTCAACCTTTTACCAGGAGCGGATGGGGATTTGCTTTTCAACGAGGATCTCGACTTGCAGTCGATATGTCAACTGCAATTCTGAAGCTCTCGGAAAGTGGAAAGCTTCAGGAAATACACGACTCATGGTTCTGCAAGCTAGGTTGTCCAGGTAATCGGGGAGGAAAGTCGGAGCCAGACCAACTTCACTTGATCAGTTTCTGGGGTTTATATTTGCTTTGTGGAATCATTTCCCTCGCTGCACTCTTCCTGTTTCTTTTAAGACTAATCCGCCAGTATATCCGTTACCTACGACACCATCGACGCCGTCATTTAGAAGAAGTTACACCATTCCCAGTTCCATCCAACAGTAGCTGTACTCAGACGATTCAAAACTTTATAGACTTTATTGATGAAAAAGAAGAAGCTATCAAGAGCTTCTTTGGAGCATCACATGGTTCTCAAAATGGGAACCAACTTCACAATCATTCCCAAAACGCCAAGGAGAAGGCTGATTCAGAGATACAGATAGGAACCATGGGTATGAATCGAGGATAG 2802 40.79 MVNFVPLPLLFVFHAFIWLFHLTPPIYCQLPSIINIAAVFTFDSVIGRAAKPAMEAAISDINADPNILNATKLNFFMEDSNCSGFLGSVGALQVLEKEIVALIGPQSSVVAHVISQIVNGLQIPQVSYAATDPTLSTLQLPYFLRTTISDSYQMAAMADLIDYYGWKEVIAIFLDDDYGRNGISFLGDELQKKMCRISHAFPLPSLDNLTKITQILDNSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLSSNYVWFATDWLSTTLDSSSPITIGASLDMLNGIVGLRPHTPESKGKRDLWNRISKMQPKGLTNSALNVYGLYAYDSVWIVAKAVDKFLKENGTIVTFSPTGKVFGSNESGIQLGKVKVFDRGSDLLRILMQTDYNGLSGRIQFGEDRSVVNGSYDVININQRKMKLVGHWSNDSRFHSYLDQKLENVVWPGGKKEIPRGWVIADSGKPLRIAFPRRASFVDFVTQLNNTNIVQGYVIDIFKEALKFVPYEVPYKFVPFGDGKVNPSYDELVQSVANNVFDAAVGDIAIITNRTKVVDFSQPYTTTGLIIVAPVEDSKSSAWVFLKPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIITMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTLQQLWSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPSSRLLRLDSPEDYEKALRLGPKGGGVAAIIDELPYLELFLSNTKEFGIIGQPFTRSGWGFAFQRGSRLAVDMSTAILKLSESGKLQEIHDSWFCKLGCPGNRGGKSEPDQLHLISFWGLYLLCGIISLAALFLFLLRLIRQYIRYLRHHRRRHLEEVTPFPVPSNSSCTQTIQNFIDFIDEKEEAIKSFFGASHGSQNGNQLHNHSQNAKEKADSEIQIGTMGMNRG 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2956145 2962666 - MELO3C018812.2.1 Cme01g00419 317395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00419 933 SUPERFAMILY Periplasmic binding protein-like II 439 799 - -
Cme01g00419 933 PIRSF IGluLR_plant 1 928 IPR017103 -
Cme01g00419 933 PANTHER GLUTAMATE RECEPTOR 3.7 19 904 - -
Cme01g00419 933 SMART GluR_14 460 801 IPR001320 GO:0015276|GO:0016020
Cme01g00419 933 MobiDBLite consensus disorder prediction 906 933 - -
Cme01g00419 933 Pfam Ligand-gated ion channel 800 831 IPR001320 GO:0015276|GO:0016020
Cme01g00419 933 Gene3D - 748 806 - -
Cme01g00419 933 Pfam Bacterial extracellular solute-binding proteins, family 3 477 799 IPR001638 -
Cme01g00419 933 Pfam Receptor family ligand binding region 51 410 IPR001828 -
Cme01g00419 933 Gene3D - 452 569 - -
Cme01g00419 933 Gene3D - 149 424 - -
Cme01g00419 933 Gene3D - 570 702 - -
Cme01g00419 933 SUPERFAMILY Periplasmic binding protein-like I 28 451 IPR028082 -
Cme01g00419 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 47 63 - -
Cme01g00419 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 107 135 - -
Cme01g00419 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 238 261 - -
Cme01g00419 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 904 - -
Cme01g00419 933 Gene3D - 53 401 - -
Cme01g00419 933 CDD GluR_Plant 457 799 - -
Cme01g00419 933 CDD PBP1_GABAb_receptor_plant 35 426 IPR044440 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00419 Cme11g00789 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00419 Cme-Chr1:2956145 Cme11g00792 Cme-Chr11:10157240 0 dispersed
Cme12g00832 Cme-Chr12:15057500 Cme01g00419 Cme-Chr1:2956145 2.67E-07 transposed
Cme01g00419 Cme-Chr1:2956145 Cme11g00787 Cme-Chr11:10028159 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00419 K05387 - csv:101203158 1727.99