Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00435 ATGGCCTGGACCCGACGATCCCCCGTCGGCAACGGCTCCTCCGCCACCGTCTACCTCGCCTCCACCGCATCCTCCGGCGAACTATTCGCCGTCAAGTCCGCCGAGCTTCTCAAATCAGACTTCTTGAAAACAGAGCAAAGGATTCTTTCTTCCCTGTCCCACCCTTCAATTGTGGGCTACAGGGGATTCGATGTAACGAGAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGCCGACGGTGGTACTCTCACCGATGAAATATTCCGGCGTGGTGGCCGGATTAAGGAGGCAACGGCGGCGTTTTACACTCGTGAAATTGTTAGAGGATTGGAGTACTTGCACAAACAGGGGTTGGTGCATTGTGATATCAAAGCTAAGAACATTTTAATCGCTGGAGATGGGTTGAAGATTGCTGATTTTGGATGCTCCAAATGGGTTTGTGAGGCCGAGGCAGTAAAAGGGGGAACGCCGATGTTCATGGCACCGGAGGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGACATATGGGCACTTGGGTGTACATTAATCGAAATGGTCACTGGCGCTCTACCATGGAAAACTACCGACGACCCAGTTTCGGTGTTGTACAGGATCGGATATTCTGGCGAGTCCCCGGAAGTTCCGAGCTTTCTGTCAGAGAAAGGAAATGATTTTTTAAGGAAATGCTTGAGAAGGGAAGCAACCGAACGATGGAGTGCGAGTCAACTTCTTGAACATCCATTTTTGGGGGAATTGAGTTCTGGGTTGGAGGAAATCAAGGAATTACATTCATATTCTGAATCTCCGACGAGTATTTTAGATCAAAGCCTCTGGAATTCTTTGGAAGAAGAATCAGAAACTTTGTTGAAAACAGAGCAATGGGACGACGAGGACGAGGATGATGACAGAATCGAACGACTGGCTACGTTTTCAGGAGAAATTAAGTGGGAATTTGGAGATGAGAATTGGATCACAATCAGAAGCTATGTAGATGGTGAAGATGAAGATGAATTAAATTTTAGTAGAAATGATTTAGATGACTTAGAGGAAGAGGGAAGAATAGTTAGTGAGAAAATCCAGTATTTGGAATTGTTAGATAAAACAGTTAGCTTTAGAGTAAGGTAG 1137 46.17 MAWTRRSPVGNGSSATVYLASTASSGELFAVKSAELLKSDFLKTEQRILSSLSHPSIVGYRGFDVTRENGKLMYNLFMEYADGGTLTDEIFRRGGRIKEATAAFYTREIVRGLEYLHKQGLVHCDIKAKNILIAGDGLKIADFGCSKWVCEAEAVKGGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGALPWKTTDDPVSVLYRIGYSGESPEVPSFLSEKGNDFLRKCLRREATERWSASQLLEHPFLGELSSGLEEIKELHSYSESPTSILDQSLWNSLEEESETLLKTEQWDDEDEDDDRIERLATFSGEIKWEFGDENWITIRSYVDGEDEDELNFSRNDLDDLEEEGRIVSEKIQYLELLDKTVSFRVR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3147153 3148289 - MELO3C018825.2.1 Cme01g00435 317411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00435 378 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00435 378 CDD STKc_MAPKKK 3 253 - -
Cme01g00435 378 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cme01g00435 378 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 342 - -
Cme01g00435 378 Gene3D Transferase(Phosphotransferase) domain 1 2 314 - -
Cme01g00435 378 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00435 378 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Cme01g00435 378 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 342 - -
Cme01g00435 378 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00435 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00435 Cme11g00827 CCT
Cme01g00435 Cme11g00827 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00435 Cme-Chr1:3147153 Cme08g00577 Cme-Chr8:3655913 1.30E-71 dispersed
Cme01g01016 Cme-Chr1:12531247 Cme01g00435 Cme-Chr1:3147153 4.82E-105 transposed
Cme01g00435 Cme-Chr1:3147153 Cme11g00827 Cme-Chr11:10812050 3.74E-127 wgd
Cme01g00435 Cme-Chr1:3147153 Cme08g00419 Cme-Chr8:2548921 1.75E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64597 PF00069 Pkinase 1.60E-55 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00435 K20716 - csv:101205351 685.256