Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00436 ATGGTGGATGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAGTGAAAAACGAGAGAGCAGTCCTTCAAGCTGAATTGGAGAGGATAAACTCAGAGAATCTAAGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACTCTACAGATGCAATTCAATACACTAATACAAACCCAGAAAACAGAAGACGTCGGTGACCCAATTGAGGAAAACGCCGACGGCAGTGGTGGCGGAGGGAATAATAATAACAACAACAACAACAATAATACAAATATTAGTAATAAACTGGTGCCGAGACAATTTATGGATCTTGGATTAGCTACCAATATGGAGAACGATGAGGAGTCGATGTCTTCGTCAGAAGGAAGGAGTGGGGAGCGCTCCCGGTCGCCGGGAAACACCGGAGAAGTAGCATCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAACAATAATAATAATAAAGTTCCAAAATTCAGTTCTTCATCGGGTAAAGAAGTGGATCAAACTGAAGCTACTATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCACCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTACTATCGTTGCACAATGGCTCTCGGCTGCCCGGTTAGGAAACAAGTACAAAGATGTGCAGAAGACAAAACAATATTGATAACAACCTACGAAGGAAACCACAACCATCCATTGCCGCCGGCAGCCATGGCCATGGCATCTACCACATCATCGGCGGCAAGAATGCTTCTATCAGGATCCATGTCAAGTGCTGATGGTTTAATGAACTCCAACTTTTTAGCAAGAACCTTATTACCTTGTTCTTCAAGCATGGCTACAATCTCAGCCTCAGCTCCATTTCCCACCGTCACATTAGACCTAACTCAAACCCCTAATCCTTTATTCCAACGCCCAGCCCCTGGTCACTTCCCGATCCCATTCGCAGCGGCCGCTCCCCCTCAAACCTTCCCACAGATCTTTGGACATGCTTTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCTAAGGATATCGAAGCACCGTCTCCTCCCCCACCTACGCAAAATCCATTTACCGACACGTTGAGTGTGGCGGGTGCAGCCATCGCGTCTGACCCCAATTTCATTGCGGCCTTGGCAACAGCAATGACGTCGCTGATCGGGGGATCGCATCATCAGAAGGAGAATGGTAATGGCAGTAGTAATGTTGATAATAAAACAAGTAGCAACTCCCAACAGTAA 1317 45.41 MVDDGVSPNPEEKRVKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTEDVGDPIEENADGSGGGGNNNNNNNNNNTNISNKLVPRQFMDLGLATNMENDEESMSSSEGRSGERSRSPGNTGEVASKRHSPDQSSNWGSNNNNNNKVPKFSSSSGKEVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAPGHFPIPFAAAAPPQTFPQIFGHALYNQSKFSGLQMSKDIEAPSPPPPTQNPFTDTLSVAGAAIASDPNFIAALATAMTSLIGGSHHQKENGNGSSNVDNKTSSNSQQ 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3169672 3173441 - MELO3C018826.2.1 Cme01g00436 317412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00436 438 ProSiteProfiles WRKY domain profile. 191 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00436 438 SMART WRKY_cls 196 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00436 438 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 435 IPR044810 GO:0003700
Cme01g00436 438 MobiDBLite consensus disorder prediction 414 438 - -
Cme01g00436 438 MobiDBLite consensus disorder prediction 125 174 - -
Cme01g00436 438 MobiDBLite consensus disorder prediction 67 95 - -
Cme01g00436 438 Gene3D WRKY domain 181 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g00436 438 PANTHER OS05G0567200 PROTEIN 1 435 - -
Cme01g00436 438 MobiDBLite consensus disorder prediction 77 95 - -
Cme01g00436 438 MobiDBLite consensus disorder prediction 113 190 - -
Cme01g00436 438 SUPERFAMILY WRKY DNA-binding domain 189 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g00436 438 Pfam WRKY DNA -binding domain 198 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00436 438 Coils Coil 12 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00436 Cme-Chr1:3169672 Cme12g01756 Cme-Chr12:24233364 5.10E-46 dispersed
Cme07g00117 Cme-Chr7:778340 Cme01g00436 Cme-Chr1:3169672 5.29E-22 dispersed
Cme06g01299 Cme-Chr6:10822082 Cme01g00436 Cme-Chr1:3169672 2.23E-53 transposed
Cme01g00436 Cme-Chr1:3169672 Cme08g00421 Cme-Chr8:2563779 1.58E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40712 PF03106 WRKY 2.40E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00436 - - csv:101205587 722.62