Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00454 ATGGAAGGAGGTGGATCCAGTGGTAGCAGCTGTTCTTTCATGGCTACTTGTAACAGCACGACCAACAACAACAATTCTAATAACACTTCCATGATGATGATGATGATCAATAAAACTAATAATAATCCTCAAACATTTGACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTTCTACTTCCAACAATAACAATAATAATAATGTTCAAACTCAAACTCCTCTTTCTACTTTTCTTCCTCAACCCCATACTAATAATAGTAATGATCATGATGCTCCTCCTACTTCTACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCACTGCTTATGTCAACTGTCAAAAGGTGGGTGCACCGCCTGAAGTTGTAGCGAGGCTAGAGCAGGCATGCGCGGTGGCGACGGGAAGCTGTAGGGCGGCGGGACATGGGAATGATCCAGCGTTGGATCAGTTCATGGAGGCTTACTGTGAGATGTTGACTAAATATGAACAAGAGCTGACCAAACCTTTTAAAGAAGCAATGCTTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAGCTCAAGCAGTTTCTTCTGATGGTTTCGATTTGGTCGCGCAAAACGATTGCTCGAAGGAGATTGAGGTCGATATGAATGAAAACTACATTGACCCTCAAGCTGAAGTGAAGGAACTCAAAGGCCAGCTTCTACGTAAATACAGCGGATATCTTGGCAGCCTGAAACAAGAGTTTTTGAAGAAGAAGAAGAATGGAAAGTTACCGAAAGAAGCTCGACAACAATTGCTCGACTGGTGGAGCCGACACTACAAATGGCCATATCCCTCGGAATCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGGAAGAGGCATTGGAAGCCAACAGAAGATATGCAATTTGTGGTGATGGATACTGGTCATCCACATTACTATTTGGATAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCCTCTCATTTCTGA 1041 42.84 MEGGGSSGSSCSFMATCNSTTNNNNSNNTSMMMMMINKTNNNPQTFDNKMFLPLSWSSSTSNNNNNNNVQTQTPLSTFLPQPHTNNSNDHDAPPTSTSKAKIMAHPLFPRLLTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKAQAVSSDGFDLVAQNDCSKEIEVDMNENYIDPQAEVKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPTEDMQFVVMDTGHPHYYLDNVICNPFSMDCSSSHF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3270374 3274808 - MELO3C018844.2.1 Cme01g00454 317430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00454 346 ProSiteProfiles ELK domain profile. 228 248 IPR005539 GO:0003677
Cme01g00454 346 SMART KNOX1_2 96 140 IPR005540 GO:0003677|GO:0005634
Cme01g00454 346 SMART ELK_2 228 249 IPR005539 GO:0003677
Cme01g00454 346 Gene3D - 253 315 - -
Cme01g00454 346 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 337 - -
Cme01g00454 346 ProSiteProfiles 'Homeobox' domain profile. 248 311 IPR001356 GO:0003677
Cme01g00454 346 MobiDBLite consensus disorder prediction 57 97 - -
Cme01g00454 346 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 337 - -
Cme01g00454 346 ProSitePatterns 'Homeobox' domain signature. 286 309 IPR017970 GO:0000981|GO:0006355
Cme01g00454 346 SMART HOX_1 250 315 IPR001356 GO:0003677
Cme01g00454 346 SMART KNOX2_2 143 194 IPR005541 GO:0003677|GO:0005634
Cme01g00454 346 Pfam Homeobox KN domain 268 307 IPR008422 GO:0003677|GO:0006355
Cme01g00454 346 Pfam ELK domain 228 249 IPR005539 GO:0003677
Cme01g00454 346 CDD homeodomain 260 311 IPR001356 GO:0003677
Cme01g00454 346 Pfam KNOX1 domain 99 136 IPR005540 GO:0003677|GO:0005634
Cme01g00454 346 SUPERFAMILY Homeodomain-like 250 325 IPR009057 -
Cme01g00454 346 Pfam KNOX2 domain 147 191 IPR005541 GO:0003677|GO:0005634
Cme01g00454 346 MobiDBLite consensus disorder prediction 57 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00454 Cme-Chr1:3270374 Cme10g00541 Cme-Chr10:3457746 7.35E-68 dispersed
Cme01g00454 Cme-Chr1:3270374 Cme08g00429 Cme-Chr8:2617977 1.60E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40715 PF03791 KNOX2 2.50E-21 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00454 - - csv:101205039 623.239