Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g00456 | ATGGCACAGTTACCACCTAAGATCCCGAATATGGCTTCTAATTGGCCTGAACTTTCCCGTCAGAAAATCCCTTCCACGGAAACTTTTGCACCTACCACCACTACACCACCGGTTACTCAACAAAATCATCCTTCTTGGGTTGATGAATTCCTTGATTTCTCTTCCGCTAGACGTGGATCACATCGTCGGTCTGTTAGTGATTCCATCACATTTCTTGAAATGCCAATGCTGGAGGATGATTGTCGTGCCTCCGCTGCACCCCCACCGCCGTCCACGGCAGCCGGTGACAGGAATGAATTTGATAGATTTGATGACGAGCAATTCCTGTCGATGTTTAATGACGAAATCTCCGCTGCTGTTGCACCAACTTTGTCGTCCTCGAACCCTTCCACGCCGTCTGATCATAACAGTATTAACGATGAGAAAGATGCGCAAAACGATGGGAAGGTAAATCAGAATAAAAATGAACCTGACGAAGTACAGAGCCCGCAGCATTCGGAAAATCAAACTCAATCCAATTCAACGGCGACGGCGGGTTCCACTGATCGGATAACAGACCCAAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCAGCACAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAACTTGAACGAAGCGTTACATCATTACAGGCTGAAGTATCGGTGTTGTCGCCGCGAGTGGCGTTTTTGGACCATCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTGAGACAAGTATATCACCAACAAAATATCAAGAAAATGGAAAACGCATCACCATCACCAGCAATAACTCCGTCTCAACCTGTCGCCACCACCATCCCCGATGGCAAACTTCCAAACGTAGATCAAAACGAGCAAGTTCCAAACGTCATGGTTTAG | 984 | 45.93 | MAQLPPKIPNMASNWPELSRQKIPSTETFAPTTTTPPVTQQNHPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEDDCRASAAPPPPSTAAGDRNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKVNQNKNEPDEVQSPQHSENQTQSNSTATAGSTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMENASPSPAITPSQPVATTIPDGKLPNVDQNEQVPNVMV | 327 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3307587 | 3310903 | - | MELO3C018845.2.1 | Cme01g00456 | 317432 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g00456 | 327 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 191 | 206 | IPR004827 | GO:0003700|GO:0006355 | |
| Cme01g00456 | 327 | Pfam | Basic region leucine zipper | 185 | 233 | IPR004827 | GO:0003700|GO:0006355 | |
| Cme01g00456 | 327 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 303 | - | - | |
| Cme01g00456 | 327 | Coils | Coil | 267 | 287 | - | - | |
| Cme01g00456 | 327 | MobiDBLite | consensus disorder prediction | 122 | 189 | - | - | |
| Cme01g00456 | 327 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Cme01g00456 | 327 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 186 | 238 | IPR004827 | GO:0003700|GO:0006355 | |
| Cme01g00456 | 327 | SUPERFAMILY | Leucine zipper domain | 188 | 242 | IPR046347 | GO:0003700|GO:0006355 | |
| Cme01g00456 | 327 | SMART | brlzneu | 184 | 248 | IPR004827 | GO:0003700|GO:0006355 | |
| Cme01g00456 | 327 | Gene3D | - | 187 | 258 | - | - | |
| Cme01g00456 | 327 | MobiDBLite | consensus disorder prediction | 288 | 327 | - | - | |
| Cme01g00456 | 327 | MobiDBLite | consensus disorder prediction | 80 | 102 | - | - | |
| Cme01g00456 | 327 | CDD | bZIP_plant_RF2 | 189 | 239 | IPR044759 | GO:0003700|GO:0006355 | |
| Cme01g00456 | 327 | MobiDBLite | consensus disorder prediction | 14 | 43 | - | - | |
| Cme01g00456 | 327 | MobiDBLite | consensus disorder prediction | 155 | 182 | - | - | |
| Cme01g00456 | 327 | PANTHER | BZIP FAMILY TRANSCRIPTION FACTOR | 1 | 303 | - | - | |
| Cme01g00456 | 327 | MobiDBLite | consensus disorder prediction | 136 | 154 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00456 | Cme-Chr1:3307587 | Cme10g00697 | Cme-Chr10:4382104 | 2.46E-30 | dispersed | |
| Cme01g00679 | Cme-Chr1:6132062 | Cme01g00456 | Cme-Chr1:3307587 | 9.49E-22 | transposed | |
| Cme03g00331 | Cme-Chr3:4324576 | Cme01g00456 | Cme-Chr1:3307587 | 8.74E-19 | transposed | |
| Cme06g01213 | Cme-Chr6:9745495 | Cme01g00456 | Cme-Chr1:3307587 | 1.05E-25 | transposed | |
| Cme07g00555 | Cme-Chr7:4668034 | Cme01g00456 | Cme-Chr1:3307587 | 5.62E-99 | transposed | |
| Cme10g00171 | Cme-Chr10:1174186 | Cme01g00456 | Cme-Chr1:3307587 | 9.17E-16 | transposed | |
| Cme10g01249 | Cme-Chr10:13141141 | Cme01g00456 | Cme-Chr1:3307587 | 3.29E-22 | transposed | |
| Cme11g01417 | Cme-Chr11:21015941 | Cme01g00456 | Cme-Chr1:3307587 | 5.96E-21 | transposed | |
| Cme11g01450 | Cme-Chr11:21461257 | Cme01g00456 | Cme-Chr1:3307587 | 1.19E-23 | transposed | |
| Cme12g00052 | Cme-Chr12:526695 | Cme01g00456 | Cme-Chr1:3307587 | 5.68E-22 | transposed | |
| Cme01g00456 | Cme-Chr1:3307587 | Cme11g00851 | Cme-Chr11:11213840 | 1.96E-22 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 40716 | PF07716 | bZIP_2 | 3.50E-09 | CL0018 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g00456 | - | - | csv:101205276 | 593.964 |