Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00481 ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAGCAACAACAACAATCCTTCTGTTATTGTCAAGAAGAAGAGGAATCTCCCAGGAAATCCAGATCCTGAAGCGGAAGTAGTATCGTTGTCGCCAAAGACACTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGGAAGGGATTTCAAAGAGATCAAAACCTACAACTACATAGGAGAGGACACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGGAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTTCATCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGTAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTGCAATCAGATTGGAAAGCACACTCCAAAACTTGCGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATATTGTGTAGCATTGGCAGAAGAGACAGCAAGATTAAATGCAGCATCAACCAATATTGCCATCAACAACAATTCATTAGCTGATGGTTACATCAACAACAATCCCCCTCAATTATTCTTCCCTAATTCCTCCAACCTTTTCAAACCAAATGAAACTTCCCCCATCTTTTTCAGTAACAATAATGCTCCCACAATATCACTCCCTTTTTGGCTCCCAACAAATCCTCACCAGGTCAATAATTTCCACTATCCAACAACAACTACAACAACAACAACAACAAATTCTGATGTTCTTTCTGTTCCTTCCTTATTCAGCAATGAAGAACAACAATCATCCCATCAATTTATGTCTTCATCACCCAACATGTCAGCTACTGTTTTACTACAAAAAGCTGCACAAATTGGTGTTACAACTGATCACCCTTCATCATTGATGGAAAGTTTTGGTTTGAAATTCAGTTCAATAACTGATGGCAAAGCCTTGCTTTCAGGGATTTATGGGTCAATGATAAACTCAAATTCCAATAATGTTATTATTCCTCTTAGTGAAGAAGATCATCATCATCATCATCATCATCATCTCTACTCTGCACCACCAGCAAAGAGAATGAGACATACTGTCAGTGAAGAGAGTGTTAATGGTGGAGAAGGAGAAACAAGAGATTTCTTGGGTGTGGGAATGCACACCATATGTCATCCATCAACAGTAAATGGATGGATCTGA 1281 39.66 MSEEQTISNAFICSIPSLGSINSNNNNPSVIVKKKRNLPGNPDPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTNIAINNNSLADGYINNNPPQLFFPNSSNLFKPNETSPIFFSNNNAPTISLPFWLPTNPHQVNNFHYPTTTTTTTTTNSDVLSVPSLFSNEEQQSSHQFMSSSPNMSATVLLQKAAQIGVTTDHPSSLMESFGLKFSSITDGKALLSGIYGSMINSNSNNVIIPLSEEDHHHHHHHHLYSAPPAKRMRHTVSEESVNGGEGETRDFLGVGMHTICHPSTVNGWI 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3468044 3471386 + MELO3C018864.2.1 Cme01g00481 317457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00481 426 Gene3D Classic Zinc Finger 58 85 - -
Cme01g00481 426 SUPERFAMILY beta-beta-alpha zinc fingers 61 160 IPR036236 -
Cme01g00481 426 SMART c2h2final6 140 160 IPR013087 -
Cme01g00481 426 SMART c2h2final6 62 84 IPR013087 -
Cme01g00481 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cme01g00481 426 PANTHER ZINC FINGER PROTEIN MAGPIE 26 420 - -
Cme01g00481 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 420 - -
Cme01g00481 426 Pfam Zinc finger, C2H2 type 63 84 IPR013087 -
Cme01g00481 426 Gene3D Classic Zinc Finger 96 188 - -
Cme01g00481 426 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00481 Cme11g00875 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00481 Cme-Chr1:3468044 Cme08g00831 Cme-Chr8:5504754 5.50E-105 dispersed
Cme02g00092 Cme-Chr2:707240 Cme01g00481 Cme-Chr1:3468044 3.32E-110 transposed
Cme12g00482 Cme-Chr12:8275347 Cme01g00481 Cme-Chr1:3468044 1.50E-24 transposed
Cme01g00481 Cme-Chr1:3468044 Cme11g00875 Cme-Chr11:11738322 7.55E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40717 PF00096 zf-C2H2 0.014 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00481 K25870 - csv:101207997 776.163