Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00482 ATGCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCATTGATCTCTTCACTCAATCAAGAAGGATTGTATCTTCAACGAGTCAAACTTGGTCTCTACGATCCCACTCATTCCCTCTCTTCATGGAACCCTCGCGACAACACTCCCTGCAACTGGTCCGGCATCACTTGCGATTCCCTCACTCATTCTGTCATCGCTGTCGACCTCTCCGACTTTCAGCTCTCTGGAACTTTTCCCACTTTTATTTGTCGTCTTCCTTCTCTCTCTTCACTCTCCCTGTCTAATAACGCTATTAACGCTTCTCTTCCGGATGATGTTGCTTCTTGTTCTGGTCTCCACTTGCTGAACATGTCTCAGAATCTTCTTGCTGGTTCTATTCCCGATGGGATTTCTAAGATCTCCAATCTTCGTTCACTGGATCTCTCTGGAAATAATTTTTCTGGGGAGATTCCGACGAGTTTCGGTGGGTTTGCGCAACTTGAGACGCTGAATTTGGTTGATAATCTATTGAATGGAACCATTCCGGGGAGTTTGGGTAATATTTCGAGTTTGAAAGAGCTTCAACTTGCTTATAATCCGTTTATGCGGAGTGAGATACCGAGTGCATTCGGGAACTTGACTAAGTTGGAGGTTCTCTGGCTTGCTAACTGTAATCTTGCCGGTCAAATTCCGGCAACCATTGGCGGGATGACTCGGCTTAAGAATCTTGACTTGTCTAATAATAGACTCAGTGGGTCGATTCCGGTTTCACTCACTCAAATGAAAAGTTTAGTTCAAATTGAACTCTTTAACAACTCGCTCTCTGGGGAGTTGCCTTTAGGACTGTCTAATTTAACTTCACTCCGACGAATTGATGTGTCGATGAATCACTTGACGGGAATGATTCCGGATGAACTGTGCGCATTACAGCTTGAGTCGTTAAATTTGTTCGAGAATCGATTGGAAGGGCCTTTGCCGGAGAGTATCGTTAATTCCCCATACTTGAATGAGCTCAAGTTGTTTAACAACAAGCTTAGTGGACAGTTACCCAGTAAACTCGGCCAAAACTCGCCATTAGTTCATCTTGACGTTTCATACAACGGATTTTCTGGCGGAATTCCTCAAAACTTGTGTGCAGAAGGGAAATTGGAAGAGCTTATATTGATTTACAATTCGTTTTCTGGAAGAATCCCGGCAAGTCTTGGAAAATGCACGACTTTAAGCCGGATTCGAATGAGGAACAACAGACTCTCTGGTCCGGTTCCTGATGAATTTTGGGGTCTGCCCAATGTGTATTTGCTTGAGCTCGTTGAGAATTCTCTTTCTGGGTCTATTTCTTCGATGATATCTGGCGCTAAGAATCTCTCTATTTTGATGATTTCAGAAAATCAATTTTCAGGGTCAATTCCTAACGAGATTGGGTCGTTAAGCAATCTGACTGAACTCTCAGGTAATGACAATATGTTTTCCGGTCGAATCCCAGGAGCTTTGGTAAAGTTAAACCTGTTGAGTACACTCGATCTAAGCAAGAACAAACTTTCTGGTGAATTGCCAATGGGAATTGGAGCTTTGAAAAGGCTAAACGAGTTAAATTTAGCAAGTAATAGACTATCCGGCAATATCCCGAGTGAAATTGGAAGCCTACCGGTTCTTAATTATCTTGATCTTTCTAGTAATCATCTCAGTGGAAGTATACCTCTTGAATTGCAGAATTTGAAACTGAATTCGTTAAATTTGTCGAACAATCTGTTATCAGGAGTACTTCCTCCTCTTTATGCTGAGGATATTTACAGAGATAGTTTCCTGGGAAATCCAGGTTTGTGCAATAACGACCCAAGTCTTTGTCCTCACGTTGGAAAAGGAAAACACCAAGGCTATTGGCTTCTCAGATCCATTTTTCTACTTGCTATCATTGTTTTTGTTGTTGGGGTCATTTGGTTTTTCTTCAAGTACAAGGAATTCAAGAAGAGTAAGAAAGGAATTGCCATTTCCAAGTGGAGATCGTTTCATAAACTTGGTTTTAGTGAATATGAAATAGCAGACTGTCTCAGTGAAGACAAAGTCATTGGAAGTGGAGCGTCCGGCAAAGTGTACAAAGTCGTGCTAAAAAATGGTGAGGTCGTGGCGGTGAAGAAGCTATGGCAAGGAACAAGAAAAGAGGACACGAGTTTGGATTCAGAGAAAGATGGATTTGAGGCTGAAGTTGAGACTTTAGGGAAGATTCGTCACAAGAATATTGTAAGGTTATGGTGCTGCTGCAACACAGGCAACTGCAAGCTGCTTGTTTATGAGTACATGCCTAATGGAAGCTTGGGAGATTTGTTGCACGGCAGCATGAAGCGCTTTCTGGATTGGCCTACAAGGTATAAAGTAGTTTTGGATGCAGCTGAAGGGCTTTCTTACCTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGACATTAAGTCCAACAATATATTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCCGACTTTGGATTGGCAAAGTTTTTGAATGCTGGCAAGGGATCAGAATCTATGTCTGTCATTGCTGGTTCTTGTGGTTATATTGCACCAGAATATGCTTATACTTTAAGAGTAAACGAAAAGAGTGACATCTACAGCTTTGGGGTGGTGATTTTAGAGCTAGTGACAGGACGGCCACCAAATGATCCAGAATTTGGAGATAAAGACTTGGCAAAGTGGGTATACGCCACTGTTGATGGCAGAGAACTCGACCGAGTAATTGATCCGAAGCTTGGTTCTGAATACAAGGAAGAAATATACAGAGTCCTTGATGTTGGACTGCTTTGCACAAGCTCACTCCCTATCAACCGCCCCTCAATGAGAAGAGTCGTTAAACTACTGCAGGAGGCTGCCATAGAAACCAGACCACCCACCATTGTTAAAAAGGAAGTCAAACTTTCTCCATATTTGTCCTAG 2949 42.49 MPSLLLLLLLLLLLLLLLPPPLISSLNQEGLYLQRVKLGLYDPTHSLSSWNPRDNTPCNWSGITCDSLTHSVIAVDLSDFQLSGTFPTFICRLPSLSSLSLSNNAINASLPDDVASCSGLHLLNMSQNLLAGSIPDGISKISNLRSLDLSGNNFSGEIPTSFGGFAQLETLNLVDNLLNGTIPGSLGNISSLKELQLAYNPFMRSEIPSAFGNLTKLEVLWLANCNLAGQIPATIGGMTRLKNLDLSNNRLSGSIPVSLTQMKSLVQIELFNNSLSGELPLGLSNLTSLRRIDVSMNHLTGMIPDELCALQLESLNLFENRLEGPLPESIVNSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGGIPQNLCAEGKLEELILIYNSFSGRIPASLGKCTTLSRIRMRNNRLSGPVPDEFWGLPNVYLLELVENSLSGSISSMISGAKNLSILMISENQFSGSIPNEIGSLSNLTELSGNDNMFSGRIPGALVKLNLLSTLDLSKNKLSGELPMGIGALKRLNELNLASNRLSGNIPSEIGSLPVLNYLDLSSNHLSGSIPLELQNLKLNSLNLSNNLLSGVLPPLYAEDIYRDSFLGNPGLCNNDPSLCPHVGKGKHQGYWLLRSIFLLAIIVFVVGVIWFFFKYKEFKKSKKGIAISKWRSFHKLGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEVVAVKKLWQGTRKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGSMKRFLDWPTRYKVVLDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDKDLAKWVYATVDGRELDRVIDPKLGSEYKEEIYRVLDVGLLCTSSLPINRPSMRRVVKLLQEAAIETRPPTIVKKEVKLSPYLS 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3476964 3480377 - MELO3C018865.2.1 Cme01g00482 317458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00482 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Cme01g00482 982 SMART LRR_typ_2 238 262 IPR003591 -
Cme01g00482 982 SMART LRR_typ_2 525 549 IPR003591 -
Cme01g00482 982 SMART LRR_typ_2 93 117 IPR003591 -
Cme01g00482 982 SMART LRR_typ_2 286 310 IPR003591 -
Cme01g00482 982 SMART LRR_typ_2 189 213 IPR003591 -
Cme01g00482 982 SMART LRR_typ_2 214 237 IPR003591 -
Cme01g00482 982 SMART LRR_typ_2 141 164 IPR003591 -
Cme01g00482 982 PRINTS Leucine-rich repeat signature 241 254 - -
Cme01g00482 982 PRINTS Leucine-rich repeat signature 549 562 - -
Cme01g00482 982 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cme01g00482 982 Gene3D Phosphorylase Kinase; domain 1 666 766 - -
Cme01g00482 982 SUPERFAMILY Protein kinase-like (PK-like) 678 958 IPR011009 -
Cme01g00482 982 Gene3D Transferase(Phosphotransferase) domain 1 767 973 - -
Cme01g00482 982 ProSiteProfiles Protein kinase domain profile. 684 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00482 982 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Cme01g00482 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 976 - -
Cme01g00482 982 SMART serkin_6 684 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00482 982 SUPERFAMILY RNI-like 72 372 - -
Cme01g00482 982 ProSiteProfiles Leucine-rich repeat profile. 240 262 IPR001611 GO:0005515
Cme01g00482 982 Pfam Protein kinase domain 686 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00482 982 SUPERFAMILY L domain-like 360 610 - -
Cme01g00482 982 Gene3D Ribonuclease Inhibitor 311 619 IPR032675 -
Cme01g00482 982 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Cme01g00482 982 Pfam Leucine rich repeat 216 275 IPR001611 GO:0005515
Cme01g00482 982 Gene3D Ribonuclease Inhibitor 205 310 IPR032675 -
Cme01g00482 982 Gene3D Ribonuclease Inhibitor 25 204 IPR032675 -
Cme01g00482 982 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 9 976 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00482 Cme-Chr1:3476964 Cme08g00270 Cme-Chr8:1743543 0 dispersed
Cme04g00205 Cme-Chr4:1506131 Cme01g00482 Cme-Chr1:3476964 0 dispersed
Cme08g00688 Cme-Chr8:4552890 Cme01g00482 Cme-Chr1:3476964 0 dispersed
Cme01g00482 Cme-Chr1:3476964 Cme12g01317 Cme-Chr12:21222820 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64598 PF00069 Pkinase 4.80E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00482 - - csv:101208240 1816.59