Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00537 ATGGTTTCTACAGGGGATCAGTTAGAGAATGGGGTTGATTCCGATCAATTGGATCATGAAAACAGTTCAGATAGTCAACCGCAAGCGTCTCAGGACGATCCTGGTGGAACTAATGCTTCGAAATCAGATCACAAATGCACAGGGGCTTCCAGTAATACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATAGCACTAGTGGATCGAGGAGACATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGAACAGAATCCCCTATCTGTTTTGAAAGTATGTATTACCTCCAGTATACGAGAGAAAGTATCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGCAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGTACTCATGATGGGAAAATCACAGACACCGTTTACTTTGGTCAGCATGATCACCCTAAACCTCAACCTCATATTCCAATTCCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGGTGAACATGCTTCTGGAAATTCTCAAGATAAAACCTCCACTACGCTTAGCCCAACTCCTCAACAAACGGAGCTTACTGATATGCGTCAACCGCCATCAGTTATAGCCAGTGATAATGTAAAAGATGAAGCTTCGAAAAGGTCTCGGACTAATGATGAAGCTTCGAAAAGGTCTAGGACTATTGATGAGATTGATAGTGATGATACACCAGACCTGAAACGAGATTTCAAAAGGAAGAAAAGATGTAATATTGACGTGACGACTGTAGCAGACAAGTCAATTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGTGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCCAAAGTGGTGCTTACCACATATGAGGGCCAGCATGACCATGTTCTGCCACCTATTAGAACAGTGACGTTGAACTCAGTTGGATCCACAACAGCCCATAGTGACGAAACAAAACCAAAACCAGTTAGTACGGTGGTTCATGCTAGTAAGGATCCGCAAAGCGATTCAAGTTCTGAAGGCAAATTGATTGAAGAGAATGGGAAGTTGAATGCAACAGAAACAAGTGATGACATTATACTCGATGGGGTGGTGGTAAATCCTAGCCCAGGAGTTGCGAGTGAACAAAATAAGCAGCTGAAAGTAGCAATCGAAAGCTAG 1335 42.62 MVSTGDQLENGVDSDQLDHENSSDSQPQASQDDPGGTNASKSDHKCTGASSNTLEEAVKQPEVTIALVDRGDISNIVTEKVTHKPITAEQNPLSVLKVCITSSIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPIPVGVVTMVEEKLGEHASGNSQDKTSTTLSPTPQQTELTDMRQPPSVIASDNVKDEASKRSRTNDEASKRSRTIDEIDSDDTPDLKRDFKRKKRCNIDVTTVADKSIVESRVVVQTPSEVDIVNDGYRWRKYGQKFVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHVLPPIRTVTLNSVGSTTAHSDETKPKPVSTVVHASKDPQSDSSSEGKLIEENGKLNATETSDDIILDGVVVNPSPGVASEQNKQLKVAIES 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4022838 4026331 + MELO3C024209.2.1 Cme01g00537 317513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00537 444 MobiDBLite consensus disorder prediction 21 55 - -
Cme01g00537 444 MobiDBLite consensus disorder prediction 226 255 - -
Cme01g00537 444 MobiDBLite consensus disorder prediction 366 414 - -
Cme01g00537 444 MobiDBLite consensus disorder prediction 188 255 - -
Cme01g00537 444 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 405 - -
Cme01g00537 444 Gene3D WRKY domain 283 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 Pfam WRKY DNA -binding domain 297 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 MobiDBLite consensus disorder prediction 192 219 - -
Cme01g00537 444 MobiDBLite consensus disorder prediction 1 55 - -
Cme01g00537 444 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 405 IPR044810 GO:0003700
Cme01g00537 444 Gene3D WRKY domain 94 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 SUPERFAMILY WRKY DNA-binding domain 105 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 SUPERFAMILY WRKY DNA-binding domain 288 356 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 ProSiteProfiles WRKY domain profile. 291 356 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 SMART WRKY_cls 296 355 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g00537 444 SMART WRKY_cls 109 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00537 Cme-Chr1:4022838 Cme06g02787 Cme-Chr6:35108962 6.74E-77 dispersed
Cme01g00537 Cme-Chr1:4022838 Cme10g00381 Cme-Chr10:2444550 2.74E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40718 PF03106 WRKY 7.10E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00537 K18834 - csv:101212482 819.69