Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g00539 | ATGGCCACCTCTGCTATTCAACAGTCAGCCTTCGCCGGCCAGGCTGCCTTGAAGCAATCCAATGAGCTTGTTCGAAAGGTCGGTGCTGTCGGTGGCAGCCGCTTCACCATGAGGCGGACAGTCAAGAGTGCTCCACAGAGCATTTGGATCAAAGGAAGTTTAAAACTGTATGGACCTGATCGCCCAAAGTACTTGGGACCATTCTCTGAACAAACGCCATCTTACCTGACTGGAGAGTTCCCCGGTGACTATGGATGGGACACAGCCGGTCTGTCAGCAGATCCCGAGACTTTTGCAAAGAACCGTGAGCTTGAGGTGATCCACTCCCGATGGGCCATGCTTGGTGCATTAGGTTGTGTCTTCCCTGAACTCCTTGCAAAGAATGGCGTCAAGTTCGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTAGACTACCTTGGCAACCCAAACCTTATCCATGCTCAGAGTATCCTTGCAATCTGGGCTTGCCAGGTTGTGCTCATGGGCTTTGTTGAAGGTTACCGTGTTGGTGGCGGTCCCCTCGGTGAAGGACTAGACCCAATTTACCCAGGAGGTGCCTTCGACCCACTCGGATTGGCAGATGACCCAGATGCATTTGCTGAGTTGAAGGTCAAGGAACTTAAGAATGGAAGGCTGGCAATGTTCTCCATGTTCGGATTCTTTGTCCAGGCTATCGTCACCGGCAAGGGACCTATTGAGAATCTCTTTGACCATGTTGCAGATCCTGTTGCCAACAATGCATGGGCTTATGCAACCAACTTTGTTCCCGGAAAATGA | 819 | 51.28 | MATSAIQQSAFAGQAALKQSNELVRKVGAVGGSRFTMRRTVKSAPQSIWIKGSLKLYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK | 272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 4041354 | 4043022 | - | MELO3C024206.2.1 | Cme01g00539 | 317515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g00539 | 272 | Pfam | Chlorophyll A-B binding protein | 73 | 238 | IPR022796 | - | |
| Cme01g00539 | 272 | Gene3D | Chlorophyll a/b binding protein domain | 63 | 265 | - | - | |
| Cme01g00539 | 272 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 1 | 272 | IPR001344 | GO:0009765|GO:0016020 | |
| Cme01g00539 | 272 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED | 1 | 272 | - | - | |
| Cme01g00539 | 272 | SUPERFAMILY | Chlorophyll a-b binding protein | 56 | 269 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00539 | Cme-Chr1:4041354 | Cme08g00161 | Cme-Chr8:1126903 | 2.07E-149 | dispersed | |
| Cme01g00539 | Cme-Chr1:4041354 | Cme11g01575 | Cme-Chr11:23355951 | 1.53E-149 | transposed | |
| Cme01g00539 | Cme-Chr1:4041354 | Cme08g00160 | Cme-Chr8:1124451 | 8.58E-150 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g00539 | K08913 | - | csv:101212963 | 535.413 |