Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00552 ATGTCTTCAACGTCAGCAAATAAGACTGTGTGTTCTAAGACCAGCTTTGACCGATCGAAACATGGGGCTCATGTGGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTAGACTTTGAAGGTTCCGAAAGGTTTTTTGATTACTCTGCATCCGTTGATTTCAATGCCGCTTGTTCCACTAGCAATATTCATGCTTCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGACGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACACGCTGTGCCTAACATCGAGCAGCAAGAAGCTTTAACTTTTGGAACAGATGTACGGACTCTTTTTCGTTCACCCGGAGCTGCAGCTTTGCAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATTCTAGTCCATTGTAGAACTTCTGGTAAACCATTTTATGCAATTTTGCATCGAGTTGACGTGGGATTAATTATAGATCTGGAACCGGTGAACCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCAAGTGGGAATATATCTCTTTTGTGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCATGATGATGAACATGGAGAAGTTGTAGCTGAGTGCTGTCTATCAGACTTAGAACCATATTTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTGTTTCTGAAGAATAAAGTTAGAATGATATGTGATTGTTTGGCGCCTCCAGTTAAAGTGCTTCAAGACAGGAGATTAGCTCAGCCATTAAGTTTATGTGGGTCTGCATTGAGAGCTCCTCATGGTTGTCATGCTCGATATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACGATCAATGAGAATGATAGTGAATCGGAAAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACTAGCCCTAGGTTTGTTCCATTTCCTTTGCGATATGCTTGTGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATCTTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTTACTCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTACTTGGAGTCACCCCCACAGAGGCGCAAATTAGAAATATAGCTGACTGGCTTCTCAAAGACCATAATGGAAGCACAGGTTTAAGTACTGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCGCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATTACGTCTAAGGACTTCCTTTTCTGGTTTCGTTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTAGTGATGAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATTCATTCACTGCAATTAATATTACGGGGTTCTTTACAGGATGAAATTGAAGAAGAATGCAAGGTGATTACAACTGTCCCACCAGTTGATGAGAAGTCACAACAATTGGATGAATTGCGCGTCATTACAAATGAGATGGTTCGCCTAATTGAAACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGTTGGAACTCCAAAGCCACTGAGCTTACAGGATTGGCTATCCAGGAAGCCATGGGAATGCCCTTAGTTGATTGTCTGGTTAATGATTCTGTTAAGGTGGTAAGGAAAATGCTGTCCATGGCCATTCAAGGTATTGAAGAGAAGAACGTTGAAATCAAACTCAAAACATTTGGAACTGCGGTACAAAATGGTCCAGTGATCTTAGACGTTAACTCTTGTTGTAGCCGAGACTTAAACAATAATGTTGTAGGAATTTCTTTTATAGGGCAGGATGTTACGAAGCAAAAACTGGTAATGAACCAATACACCCAAATCCAAGGTGATTACACGGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGGCCGATGGCGAGGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGTAGAGATGACAAATAGAATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTTGGATGCCGTGTGAAAGATCACACATTGACCAAGCTTAGGATCCTACTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTCGCTTCTGTGATCGTGAAGGAAACTACATTGAATCATTGCTTACCGCAAGCAAAAGGACTGATGCAGAGGGTACTATCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGAATTTCGGAACAAGCTACAGCTGAAAATCTCCATAAATTAGCATATCTGCGTCAAGAAATTCGAAAACCCCTTGATGGGATTACATTTATGCAGAATCTAATAAGTTCATCTGACTTAAGCATAGAGCAAAAACATTACATGGAAACGAACTGTATTGAATTCAACCTTGGAGATGTCCTTGACGTTGTAACAAATCAAGCCATGATTTTGAGCCAAGAGCGTGAGGTGAAGATCATTTGTGAATCACCCGCCGACGTGTCATCTTTGCACTTATACGGAGATAACTTGAGGCTACAGCAAGTGCTCTCTGAGTTCTTGACGAACACACTTCTCTTCACTTGCAAAGAATTGTCTGTCATCTTTAAAGCAACTCCAAGGAAGGAGCGCATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCACTCCAGGAATTCCTGCACACTTAATCCAAGAGATGTTTGACGACAACAACGATAGCTCAAAGGAAGGTCTTGGCTTATACATAAGCCAGAAGCTTGTGAAGATTATGAATGGCACTGTACAGTATCTTCGAGAGGCGGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAGCATGTTGCTGGATGA 3279 41.96 MSSTSANKTVCSKTSFDRSKHGAHVVAQTPIDAKLHVDFEGSERFFDYSASVDFNAACSTSNIHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCLSDLEPYFGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLAQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYFRKKFWLLGVTPTEAQIRNIADWLLKDHNGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPSDEDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEIEEECKVITTVPPVDEKSQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQEAMGMPLVDCLVNDSVKVVRKMLSMAIQGIEEKNVEIKLKTFGTAVQNGPVILDVNSCCSRDLNNNVVGISFIGQDVTKQKLVMNQYTQIQGDYTGIMRNPSALIPPIFMADGEGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLENFGCRVKDHTLTKLRILLHRVISGQDTEKFLFRFCDREGNYIESLLTASKRTDAEGTITGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIRKPLDGITFMQNLISSSDLSIEQKHYMETNCIEFNLGDVLDVVTNQAMILSQEREVKIICESPADVSSLHLYGDNLRLQQVLSEFLTNTLLFTCKELSVIFKATPRKERIGKGIHIVHLELRITHPTPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYLREAETSSFIILIEFPLVEHVAG 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4104281 4111289 - MELO3C024196.2.1 Cme01g00552 317528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00552 1092 Gene3D - 403 576 IPR043150 -
Cme01g00552 1092 SMART pas_2 745 815 IPR000014 -
Cme01g00552 1092 SMART pas_2 615 681 IPR000014 -
Cme01g00552 1092 Gene3D PAS domain 74 322 - -
Cme01g00552 1092 PIRSF Phytochrome_conventional 925 1091 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cme01g00552 1092 PIRSF Phytochrome_conventional 2 933 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cme01g00552 1092 Gene3D - 909 1080 IPR036890 -
Cme01g00552 1092 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 974 1080 IPR003594 -
Cme01g00552 1092 Gene3D PAS domain 601 744 - -
Cme01g00552 1092 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Cme01g00552 1092 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Cme01g00552 1092 TIGRFAM sensory_box: PAS domain S-box protein 620 734 IPR000014 -
Cme01g00552 1092 TIGRFAM sensory_box: PAS domain S-box protein 760 866 IPR000014 -
Cme01g00552 1092 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Cme01g00552 1092 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Cme01g00552 1092 CDD PAS 757 867 IPR000014 -
Cme01g00552 1092 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Cme01g00552 1092 SMART gaf_1 219 408 IPR003018 GO:0005515
Cme01g00552 1092 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Cme01g00552 1092 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 935 1085 IPR036890 -
Cme01g00552 1092 Gene3D - 200 559 IPR029016 -
Cme01g00552 1092 ProSiteProfiles Histidine kinase domain profile. 896 1088 IPR005467 -
Cme01g00552 1092 Pfam PAS fold 616 730 IPR013767 GO:0006355
Cme01g00552 1092 Pfam PAS fold 756 867 IPR013767 GO:0006355
Cme01g00552 1092 PANTHER PHYTOCHROME C 1 932 - -
Cme01g00552 1092 PANTHER PHYTOCHROME C 937 1088 - -
Cme01g00552 1092 CDD HATPase_Phy-like 973 1084 IPR044767 -
Cme01g00552 1092 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 932 - -
Cme01g00552 1092 PANTHER TWO-COMPONENT HISTIDINE KINASE 937 1088 - -
Cme01g00552 1092 SMART HKATPase_4 974 1088 IPR003594 -
Cme01g00552 1092 Gene3D PAS domain 759 870 - -
Cme01g00552 1092 SUPERFAMILY GAF domain-like 406 586 - -
Cme01g00552 1092 Pfam GAF domain 220 398 IPR003018 GO:0005515
Cme01g00552 1092 Pfam PAS fold 71 186 IPR013654 GO:0006355
Cme01g00552 1092 SUPERFAMILY GAF domain-like 199 395 - -
Cme01g00552 1092 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Cme01g00552 1092 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 733 IPR035965 -
Cme01g00552 1092 CDD PAS 624 730 IPR000014 -
Cme01g00552 1092 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00552 Cme-Chr1:4104281 Cme03g01314 Cme-Chr3:22648039 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00552 - - csv:101211915 2093.16