Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00556 ATGCCCCGTCCCCTTCCCCTCCCCGCCCTCGCCTCTCTGGCTCTCCCTCTCTTCCTCCTCCTCATCTTCTCCTCCTCCTCCGCCGACGCTCACAACATCACCAGAATCCTCGCCAAACACCCTGAGTTCAGTACCTTCAACCACTACCTCACAATCACCCATCTCGCTGGCGAAATCAACCGCCGTCTTACCATTACTGTCCTCGCCTTAGACAACTCTGCCATGTCCGCTCTCCTCGACAAGCATTTCTCCGTTGGCACTATCAAGAATGTGCTCTCCCTTCATGTTCTTGTTGATTACTACGGCGCTAAAAAGCTTCACCAGCTTTCTAAAGGAACTACCCTCTCTTCTACTCTGTTTCAGGCCACCGGTTCCGCTACTGGAACTTCTGGATATGTTAATATCACTAATATGAGAGGCGGTAAGGTGGGATTTGGATCGGAGGATAACGGCGGCGATCTCAATTCCTTTTATGTTAAATCGGTTGTGGAAATGCCTTACAATATCTCCATCTTGCAGATCAGTAAGAAAACGACAATTTTGTTAGTTAACCGTAACAGTTATTTTAACACATTGGGATTTTACGTAGGTTATAACATCCGCCGACGCCGAGGCGCCTACGGCGGCGCCGGTTAG 636 49.69 MPRPLPLPALASLALPLFLLLIFSSSSADAHNITRILAKHPEFSTFNHYLTITHLAGEINRRLTITVLALDNSAMSALLDKHFSVGTIKNVLSLHVLVDYYGAKKLHQLSKGTTLSSTLFQATGSATGTSGYVNITNMRGGKVGFGSEDNGGDLNSFYVKSVVEMPYNISILQISKKTTILLVNRNSYFNTLGFYVGYNIRRRRGAYGGAG 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4140869 4143668 + MELO3C024192.2.1 Cme01g00556 317532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00556 211 Gene3D FAS1 domain 29 184 IPR036378 -
Cme01g00556 211 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 176 IPR033254 -
Cme01g00556 211 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 16 176 - -
Cme01g00556 211 ProSiteProfiles FAS1/BIgH3 domain profile. 30 187 IPR000782 -
Cme01g00556 211 Pfam Fasciclin domain 41 118 IPR000782 -
Cme01g00556 211 SUPERFAMILY FAS1 domain 36 176 IPR036378 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00556 Cme11g00968 CCT
Cme01g00556 Cme11g00968 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00556 Cme-Chr1:4140869 Cme01g00903 Cme-Chr1:10454479 3.07E-71 dispersed
Cme01g00556 Cme-Chr1:4140869 Cme04g00352 Cme-Chr4:2789357 1.98E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00556 - - csv:101214167 307.375