Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g00566 | ATGGGTCTCTCCAGTCTCCCAGCTCCGTCTGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCACTATCCATTTCCATGCTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCTGTAGTCTCATCAACAGATTCCTTTGAGAACTCCTCAGAGTTGGGAGATTCCAATTTTGGCTCTTCTTGGAATTACCTTGAGATGTTTCGAAATCGATATCCAAGGATTAGATTTGATAAAGTAAAGAGCTCAGATTGTCGTGAACATGACTGCTCTGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCTTGTGGCCATCTTTTTCACACCGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATCTTGCTTTTGGATATTTGCTAAAGCATTATGA | 483 | 41.61 | MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSSELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFWIFAKAL | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4224537 | 4226708 | - | MELO3C024183.2.1 | Cme01g00566 | 317542 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g00566 | 160 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 154 | - | - | |
Cme01g00566 | 160 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
Cme01g00566 | 160 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 146 | IPR013083 | - | |
Cme01g00566 | 160 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
Cme01g00566 | 160 | PANTHER | - | 1 | 154 | IPR044249 | - | |
Cme01g00566 | 160 | SUPERFAMILY | RING/U-box | 93 | 146 | - | - | |
Cme01g00566 | 160 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g00566 | Cme-Chr1:4224537 | Cme11g00985 | Cme-Chr11:14036352 | 1.16E-66 | dispersed | |
Cme05g01870 | Cme-Chr5:27451331 | Cme01g00566 | Cme-Chr1:4224537 | 6.22E-06 | dispersed | |
Cme01g00566 | Cme-Chr1:4224537 | Cme01g00567 | Cme-Chr1:4239755 | 4.30E-103 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g00566 | K16285 | - | csv:101215605 | 292.352 |