Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00566 ATGGGTCTCTCCAGTCTCCCAGCTCCGTCTGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCACTATCCATTTCCATGCTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCTGTAGTCTCATCAACAGATTCCTTTGAGAACTCCTCAGAGTTGGGAGATTCCAATTTTGGCTCTTCTTGGAATTACCTTGAGATGTTTCGAAATCGATATCCAAGGATTAGATTTGATAAAGTAAAGAGCTCAGATTGTCGTGAACATGACTGCTCTGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCTTGTGGCCATCTTTTTCACACCGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATCTTGCTTTTGGATATTTGCTAAAGCATTATGA 483 41.61 MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSSELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFWIFAKAL 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4224537 4226708 - MELO3C024183.2.1 Cme01g00566 317542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00566 160 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 154 - -
Cme01g00566 160 SMART ring_2 99 140 IPR001841 -
Cme01g00566 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 146 IPR013083 -
Cme01g00566 160 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Cme01g00566 160 PANTHER - 1 154 IPR044249 -
Cme01g00566 160 SUPERFAMILY RING/U-box 93 146 - -
Cme01g00566 160 Pfam Ring finger domain 98 141 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00566 Cme-Chr1:4224537 Cme11g00985 Cme-Chr11:14036352 1.16E-66 dispersed
Cme05g01870 Cme-Chr5:27451331 Cme01g00566 Cme-Chr1:4224537 6.22E-06 dispersed
Cme01g00566 Cme-Chr1:4224537 Cme01g00567 Cme-Chr1:4239755 4.30E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00566 K16285 - csv:101215605 292.352