Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00567 ATGGGTCTCTCCAGTCTCCCAGCTCCGTCTGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCTATTTCCTTGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCTGTAGTCCCTTCAACAGATTCCTTTGAAAGTTCCTCAGAGTTGGGAGATCCCATTTTTGGCTCTTCTTGGAATTACCTTGACATGTTTCGAAACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGTGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATCTTGCTTTTGTTTTCAGCCTCCTTAA 477 42.14 MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSSELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFCFQPP 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4239755 4242441 - MELO3C024182.2.1 Cme01g00567 317543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00567 158 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Cme01g00567 158 SMART ring_2 99 140 IPR001841 -
Cme01g00567 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 153 - -
Cme01g00567 158 PANTHER - 1 153 IPR044249 -
Cme01g00567 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 147 IPR013083 -
Cme01g00567 158 SUPERFAMILY RING/U-box 91 146 - -
Cme01g00567 158 Pfam Ring finger domain 98 141 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00567 Cme-Chr1:4239755 Cme11g00985 Cme-Chr11:14036352 4.18E-63 dispersed
Cme01g00566 Cme-Chr1:4224537 Cme01g00567 Cme-Chr1:4239755 4.30E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00567 K16285 - csv:101215843 297.745