Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00567 ATGGGTCTCTCCAGTCTCCCAGCTCCGTCTGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCTATTTCCTTGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCTGTAGTCCCTTCAACAGATTCCTTTGAAAGTTCCTCAGAGTTGGGAGATCCCATTTTTGGCTCTTCTTGGAATTACCTTGACATGTTTCGAAACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGTGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATCTTGCTTTTGTTTTCAGCCTCCTTAA 477 42.14 MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSSELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFCFQPP 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4239755 4242441 - MELO3C024182.2.1 Cme01g00567 317543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00567 158 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Cme01g00567 158 SMART ring_2 99 140 IPR001841 -
Cme01g00567 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 153 - -
Cme01g00567 158 PANTHER - 1 153 IPR044249 -
Cme01g00567 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 147 IPR013083 -
Cme01g00567 158 SUPERFAMILY RING/U-box 91 146 - -
Cme01g00567 158 Pfam Ring finger domain 98 141 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00567 K16285 XERICO; RING/U-box domain-containing protein [EC:2.3.2.27] - csv:101215843 297.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00567 Cme-Chr1:4239755 Cme11g00985 Cme-Chr11:14036352 4.18E-63 dispersed
Cme01g00566 Cme-Chr1:4224537 Cme01g00567 Cme-Chr1:4239755 4.30E-103 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g735 . Blo15g00434 Bda06g00433 Bda13g00587 . Bpe15g00763 Bma03g00660 . . . Cma02g00241 Cma20g00706 . . . Cpe15g00675 Cpe04g00657 Bhi05g01499 . . Lac12g0413 Hepe02g0325 . . . . . . . . . . . . . . Csa07g00239 Chy11g00731 Cme01g00567 . Blo13g00447 Bda14g00663 . . Bpe07g00667 Bma02g01295 Bma12g00872 Sed01g0593 Cmo02g00242 . . . . Car19g00652 . . Bhi10g01292 Tan05g0995 Cmetu11g0663 . Hepe08g0373 . . . . . . . . . Lsi11g01333 Csa06g00974 Chy01g00540 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g01015 . 18 505 C3H Transcription Factor Family AT2G31510 76.7 3.3e-231 797.7
Cme03g00666 . 132 584 C3H Transcription Factor Family AT2G31510 78.4 4.3e-223 770.8
Cme03g00666 . 115 577 C3H Transcription Factor Family AT2G31770 59.1 1.3e-167 586.6
Cme05g01015 . 1 479 C3H Transcription Factor Family AT2G31770 55.9 9.1e-166 580.5
Cme05g01015 . 1 464 C3H Transcription Factor Family AT2G31760 57.6 1.2e-167 586.6
Cme03g00666 . 115 584 C3H Transcription Factor Family AT2G31760 58.1 6.0e-167 584.3
Cme08g01150 . 13 170 C3H Transcription Factor Family AT5G06490 53.7 7.7e-46 180.6
Cme08g01150 . 13 170 C3H Transcription Factor Family AT5G06490 53.7 7.7e-46 180.6
Cme09g00197 . 1 226 C3H Transcription Factor Family AT3G02290 62.0 4.1e-75 278.1
Cme02g01259 . 1 279 C3H Transcription Factor Family AT1G11020 75.5 9.6e-123 436.8
Cme04g01487 . 62 253 C3H Transcription Factor Family AT1G50440 62.7 1.2e-61 233.4
Cme08g01846 . 5 367 C3H Transcription Factor Family AT5G08750 61.2 1.1e-119 426.8
Cme05g01737 . 1 418 C3H Transcription Factor Family AT3G16090 73.3 1.5e-167 586.3
Cme09g00197 . 1 225 C3H Transcription Factor Family AT5G38895 57.1 3.6e-72 268.9
Cme03g01984 . 16 227 C3H Transcription Factor Family AT1G19310 66.4 1.2e-79 293.1
Cme08g00502 . 16 225 C3H Transcription Factor Family AT1G19310 61.6 5.5e-72 267.7
Cme08g00802 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 1.2e-158 556.2
Cme03g01481 . 58 168 C3H Transcription Factor Family AT5G07040 66.7 5.1e-40 161.0
Cme02g01764 . 1 389 C3H Transcription Factor Family AT1G18470 75.3 2.4e-177 618.6
Cme09g01416 . 83 301 C3H Transcription Factor Family AT1G68200 51.3 2.3e-49 193.0
Cme03g00666 . 115 577 C3H Transcription Factor Family AT2G31770 59.1 1.3e-167 586.6
Cme05g01015 . 1 479 C3H Transcription Factor Family AT2G31770 55.9 9.1e-166 580.5
Cme05g01015 . 1 464 C3H Transcription Factor Family AT2G31760 57.6 1.2e-167 586.6
Cme03g00666 . 115 584 C3H Transcription Factor Family AT2G31760 58.1 6.0e-167 584.3
Cme01g00873 . 46 278 C3H Transcription Factor Family AT5G55970 69.1 1.0e-95 347.1
Cme08g01846 . 5 367 C3H Transcription Factor Family AT5G63780 57.1 2.9e-115 412.1
Cme04g02252 . 1 423 C3H Transcription Factor Family AT3G58030 53.2 7.7e-107 384.4
Cme01g00873 . 35 345 C3H Transcription Factor Family AT4G26580 63.1 1.3e-114 409.8
Cme09g00120 . 20 174 C3H Transcription Factor Family AT4G10150 51.6 1.7e-44 176.4
Cme08g02066 . 1 471 C3H Transcription Factor Family AT5G01960 68.2 2.9e-167 585.1
Cme10g01277 . 89 566 C3H Transcription Factor Family AT5G01960 57.1 2.9e-151 531.9
Cme11g00985 . 1 156 C3H Transcription Factor Family AT2G04240 58.6 4.5e-44 174.5
Cme01g00566 . 1 149 C3H Transcription Factor Family AT2G04240 59.5 4.8e-38 154.5
Cme01g00567 . 1 149 C3H Transcription Factor Family AT2G04240 56.5 1.4e-37 152.9
Cme05g00195 . 66 276 C3H Transcription Factor Family AT5G19430 54.5 5.6e-57 218.0
Cme07g01471 . 130 584 C3H Transcription Factor Family AT5G45290 52.2 9.3e-102 367.9
Cme05g00195 . 73 276 C3H Transcription Factor Family AT5G12310 61.4 1.5e-57 219.9
Cme04g02676 . 70 231 C3H Transcription Factor Family AT5G05830 62.3 3.2e-55 211.8
Cme03g00212 . 57 190 C3H Transcription Factor Family AT5G05830 63.4 2.0e-44 176.0
Cme09g00197 . 1 226 C3H Transcription Factor Family AT5G15790 59.5 1.7e-73 272.7
Cme03g00167 . 1 222 C3H Transcription Factor Family AT3G55530 80.2 2.7e-94 342.0
Cme06g00322 . 10 393 C3H Transcription Factor Family AT2G44580 53.6 2.4e-120 429.1
Cme03g01984 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 1.5e-40 162.5
Cme05g01737 . 119 419 C3H Transcription Factor Family AT1G65040 69.0 4.2e-110 394.8
Cme08g00502 . 17 227 C3H Transcription Factor Family AT2G23780 62.3 1.0e-73 273.5
Cme03g01984 . 6 229 C3H Transcription Factor Family AT2G23780 56.1 3.1e-67 251.9
Cme09g01782 . 36 193 C3H Transcription Factor Family AT1G63840 61.5 9.0e-48 186.8
Cme11g02182 . 1 152 C3H Transcription Factor Family AT1G63840 52.2 1.4e-40 162.9
Cme09g01316 . 1 354 C3H Transcription Factor Family AT1G68070 63.4 4.8e-120 427.9
Cme06g02670 . 47 376 C3H Transcription Factor Family AT1G68070 51.4 5.3e-87 318.2
Cme07g00036 . 4 181 C3H Transcription Factor Family AT1G76410 57.2 7.2e-54 207.2
Cme06g02323 . 6 154 C3H Transcription Factor Family AT1G76410 55.9 3.0e-44 175.3
Cme03g01669 . 1 410 C3H Transcription Factor Family AT1G80400 54.7 7.9e-114 407.5
Cme06g02323 . 13 145 C3H Transcription Factor Family AT2G17450 57.8 4.2e-38 154.8
Cme05g01015 . 18 505 C3H Transcription Factor Family AT2G31510 76.7 3.3e-231 797.7
Cme03g00666 . 132 584 C3H Transcription Factor Family AT2G31510 78.4 4.3e-223 770.8
Cme08g01150 . 10 169 C3H Transcription Factor Family AT2G35910 62.3 2.1e-52 202.6
Cme04g02311 . 8 158 C3H Transcription Factor Family AT2G35910 54.1 1.8e-43 172.9
Cme05g00090 . 28 324 C3H Transcription Factor Family AT2G41980 72.9 5.0e-129 457.6
Cme06g01141 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 3.2e-128 454.9
Cme06g01140 . 62 319 C3H Transcription Factor Family AT2G41980 80.2 4.2e-128 454.5
Cme10g00035 . 47 304 C3H Transcription Factor Family AT2G41980 79.8 1.0e-126 449.9
Cme09g01156 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.5e-125 446.0
Cme11g02420 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 1.4e-123 439.5
Cme04g02534 . 33 329 C3H Transcription Factor Family AT3G09770 58.4 2.2e-85 312.8
Cme02g01963 . 58 366 C3H Transcription Factor Family AT3G47990 69.2 1.0e-126 449.9
Cme12g01701 . 412 649 C3H Transcription Factor Family AT3G47990 66.1 1.7e-89 326.2
Cme07g00036 . 4 185 C3H Transcription Factor Family AT1G20823 58.5 4.5e-54 208.0
Cme06g02323 . 13 154 C3H Transcription Factor Family AT1G20823 58.9 2.2e-45 179.1
Cme11g00477 . 35 409 C3H Transcription Factor Family AT3G18930 52.9 9.5e-83 304.3
Cme06g02358 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 3.9e-75 278.1
Cme04g02582 . 3 272 C3H Transcription Factor Family AT5G02750 53.4 3.0e-67 252.3
Cme02g01764 . 5 415 C3H Transcription Factor Family AT1G73950 71.0 1.0e-167 586.6
Cme09g00120 . 20 160 C3H Transcription Factor Family AT1G33480 57.4 3.0e-42 169.1
Cme09g01316 . 15 252 C3H Transcription Factor Family AT2G01735 62.5 5.9e-75 277.7
Cme06g02670 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 1.2e-51 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001458 3 6 2 3 2 2 3 2 2 3 1 1 3 3 2 3 1 2 4 2 3 2 2 2 1 2 2 3 5 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00567 Cme_Chr01 FPKM 0.0 0.366239 0.227648 0.0 0.0 0.0 0.0 0.0 0.0 0.314859