Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00573 ATGGGTTACATATGTGATTTCTGTGCGCAACAAAGGTCGATTGTGTATTGCCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGAAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCACTCGAGAACATTGTTATGTGACCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACGGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCCCTTCTGGAAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCTGTAAATGCCTGGGGCCCTAATGATAAAGCTGGTCAAAATGTTTCTGGTGTAGATGAAACCAATGAGTTCTCAAGTGTGGATAAATCAATTTGGTATGGATCGTCTTCAATGCCTCACATTATGGACCAACCGATTACTATGGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGATATCGAAGATGATCTATACGAGAGTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATGAAAAACTTATCTGCCGCTAAATCTGGTTGCCCTGGTGGGGCGGCTGCAGAGGGGGCATCGGTCAGTTTTGTTAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCCGTTATGAGTGCGAAGACTGAACCAGTTCTTTGTTATAACAATAAGCAAGAGCACTCCGGCCTATCGTTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAGCCGCCATGGTGTTCTATGGCCACTGAGACTTCCTTTCAGTCATCCAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCTGATACTCGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCCGGAGAAGCTTATGACTATGATCCATTGAGTCAAACCAGAAGCTACTGA 1224 44.2 MGYICDFCAQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPNDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITMDATSPKLHYPGTKGPELDIEDDLYESLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKNLSAAKSGCPGGAAAEGASVSFVNNVMQPASSNAASADSVMSAKTEPVLCYNNKQEHSGLSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATETSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4356805 4362584 - MELO3C024179.2.1 Cme01g00573 317549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00573 407 CDD Bbox1_BBX-like 4 47 - -
Cme01g00573 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Cme01g00573 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
Cme01g00573 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 407 - -
Cme01g00573 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Cme01g00573 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 407 - -
Cme01g00573 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme01g00573 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00573 Cme-Chr1:4356805 Cme07g01930 Cme-Chr7:24509783 2.12E-15 dispersed
Cme12g01408 Cme-Chr12:21934022 Cme01g00573 Cme-Chr1:4356805 1.14E-10 dispersed
Cme01g00573 Cme-Chr1:4356805 Cme11g00980 Cme-Chr11:13935781 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40721 PF06203 CCT 2.70E-16 CL0281 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00573 - - csv:101216326 811.986