Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00577 ATGAGACTCTCAACACTTTCTTCTTCCATTTTTCTTCTTTCATTATTTCTTCTCCTTTCTTCTTCGCTATTCACTCCTACGTCCGCCATTAAAAGGTCCTATGTTGTCTACATGGGAGCTCACTCCCACGGTGGTCGAAAACCGGCCGATGTCGTCGCCGATTCTCACCACCAATTCCTCCAACCATTTCTCAAGAGTGGAGAAGAGTTTACAAAAGATGTGATATTTTACTCATATACAAGACACATCAATGGATTTGCAGCAATGTTGGAAGATGAAGTAGCTGCTCAATTAGCTAAGCATCCGAGAGTGGTATCGGTTTTTCTAAATAGAGGAAGAAAATTACACACAACAAGATCGTGGGAGTTCATGGGATTGGAGAACGAGAATGGAGTTATCGAATCAGAATCAATATGGAAGAAAGCAAGATTTGGAGAAGACACCATTATTGGAAACCTTGATACTGGGGTGTGGGCAGAATCAAAGAGCTTTAGTGATGATGAAATGGGACCAATTCCTCATAGGTGGAAAGGAATCTGCCAAAACCAAAATGATCCTTCTTTCCATTGCAATAGGAAACTAATCGGAGCAAGATACTTCAACAAAGGCTATGCATCTGTTGTCGGCCCTCTCAATTCCTCATTCCATTCGCCGAGGGATAAAGAAGGCCATGGCTCTCATACCCTGTCCACCGCCGGCGGTAACTTCGTCGCCGGAGCTAGCGTTTTCGGCTTAGGAAAGGGCACCGCCAAGGGCGGATCACCTAGGGCTCGGGTGGCCGCTTACAAGGTCTGCTGGCCTCCGAAGGCCGGAAATGAGTGCTTCGATGCCGATATATTGGCCGCGTTTGATTTGGCGATTCATGACGGTGTCGATGTGTTGTCGGTGTCCCTTGGAGGAGATCCGAATCCGTTGTTTAACGATAGTGTAGCCATTGGCTCATTCCACGCCATCAAGCATGGGATTGTCGTGATTTGCTCTGCCGGAAATTCGGGACCGGCAGCCGGTACGGTGACCAATGTTGCGCCCTGGCAGATCACCGTCGGAGCCAGCACCATGGACAGGAAGTTCCCTAGTCTTGTTGTTCTTGGGAACAAGAAGCAGATTGAGGGTGAAAGCCTGTCCCAGGAAGCTTTACCAAGCAAGAAGCTCTATCCACTCATGAATGCTGCAGATGTTAGATTAGCCAATGCATCAGCTCATGAAGCTCAATTGTGTAAAGCTGGTACACTTGACCCTATGAAAGCTAAGGGAAAGATCCTTGTCTGCCTTCGAGGCGATAATGCAAGAGTTGACAAAGGCGAACAAGCATTGTTGGCTGGTGCTGCAGGCATGATTCTTGCTAATAACGAGCTTAGTGGGAATGAAATCCTTGCTGACCCACATGTCCTTCCAGCCTTGCACATAAACTACACCGATGGCAGTGCAGTCTTTGCATACATCAATTCAACTAAGTTCCCAGAGGCTTACATCACACCAGCTACAACTCAATTAGGTATAAGGCCAGCTCCATTCATGGCAGCATTTTCATCGGTGGGGCCAAACACTGTTACTCCAGAGATCCTGAAGCCTGATATTACAGCTCCTGGGCTGAGTGTTATAGCTGCTTATACTGAAGCAGAAGGACCTACGAACCAAGAATTTGATAATCGTCGGGTTCCTTTTAACTCGGTATCAGGAACTTCCATGTCATGCCCTCATGTTTCTGGCATTGCTGGTCTTCTCAGGACTCTTTACCCTCATTGGAGTCCTGCAGCTATCAAATCTGCCATCATGACCACGGCAAGCACTTTAGACAACAACTTTGAGCCGCTCCTCAACGCGTCCTACTTTGTGGCCACACCATTCAACTATGGAGCTGGACATGTTCATCCAAATGGTGCTACAGATCCTGGCTTGGTCTATGACATAGATGTAAATGAATATCTGTCATTTCTATGTGCATTAGGATATGACAAAGCTCAAATATCACAATTCTCCGATGGTCCCTTCAATTGCTCGGAGCCTATTAGTCTTACAAACCTCAACTATCCTTCAATAACTGTCCCTAAACTCTCAAGATCGATCACGATTACTCGAAGACTAAAGAATGTCGGTTCTCCTGGAACATACGAAGCCAAGATAAGGAAACCGGCTGGGATATCGGTTTGGGTTAAGCCAAAGAAGTTGAACTTCACAAAATTAGGAGAAGAGCTGAGCTTCAAAGTTTTTATGAAAGTCAAGGGACATAAAGTAGCCAAGAAGAATTATGTATATGGTGATTTGATATGGTCAGATGGTAAGCACCATGTAAGAAGCCCTATTGTGGTAAAAGTAGTCTAG 2322 45.82 MRLSTLSSSIFLLSLFLLLSSSLFTPTSAIKRSYVVYMGAHSHGGRKPADVVADSHHQFLQPFLKSGEEFTKDVIFYSYTRHINGFAAMLEDEVAAQLAKHPRVVSVFLNRGRKLHTTRSWEFMGLENENGVIESESIWKKARFGEDTIIGNLDTGVWAESKSFSDDEMGPIPHRWKGICQNQNDPSFHCNRKLIGARYFNKGYASVVGPLNSSFHSPRDKEGHGSHTLSTAGGNFVAGASVFGLGKGTAKGGSPRARVAAYKVCWPPKAGNECFDADILAAFDLAIHDGVDVLSVSLGGDPNPLFNDSVAIGSFHAIKHGIVVICSAGNSGPAAGTVTNVAPWQITVGASTMDRKFPSLVVLGNKKQIEGESLSQEALPSKKLYPLMNAADVRLANASAHEAQLCKAGTLDPMKAKGKILVCLRGDNARVDKGEQALLAGAAGMILANNELSGNEILADPHVLPALHINYTDGSAVFAYINSTKFPEAYITPATTQLGIRPAPFMAAFSSVGPNTVTPEILKPDITAPGLSVIAAYTEAEGPTNQEFDNRRVPFNSVSGTSMSCPHVSGIAGLLRTLYPHWSPAAIKSAIMTTASTLDNNFEPLLNASYFVATPFNYGAGHVHPNGATDPGLVYDIDVNEYLSFLCALGYDKAQISQFSDGPFNCSEPISLTNLNYPSITVPKLSRSITITRRLKNVGSPGTYEAKIRKPAGISVWVKPKKLNFTKLGEELSFKVFMKVKGHKVAKKNYVYGDLIWSDGKHHVRSPIVVKVV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4409737 4419051 + MELO3C024176.2.1 Cme01g00577 317553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00577 773 CDD Peptidases_S8_3 114 596 IPR034197 -
Cme01g00577 773 ProSiteProfiles Serine proteases, subtilase domain profile. 120 629 - -
Cme01g00577 773 Pfam PA domain 405 476 IPR003137 -
Cme01g00577 773 SUPERFAMILY Subtilisin-like 115 633 IPR036852 GO:0004252|GO:0006508
Cme01g00577 773 Pfam Fibronectin type-III domain 674 770 IPR041469 -
Cme01g00577 773 Gene3D - 354 498 - -
Cme01g00577 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 560 570 IPR023828 -
Cme01g00577 773 Pfam Subtilase family 145 598 IPR000209 GO:0006508|GO:0008236
Cme01g00577 773 Pfam Peptidase inhibitor I9 33 116 IPR010259 -
Cme01g00577 773 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 19 772 - -
Cme01g00577 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 116 IPR037045 -
Cme01g00577 773 Gene3D - 646 773 - -
Cme01g00577 773 PANTHER PEPTIDASE S8 19 772 - -
Cme01g00577 773 Gene3D Peptidase S8/S53 domain 147 642 IPR036852 GO:0004252|GO:0006508
Cme01g00577 773 SUPERFAMILY PA domain 413 496 IPR046450 -
Cme01g00577 773 CDD PA_subtilisin_like 361 491 - -
Cme01g00577 773 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
Cme01g00577 773 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Cme01g00577 773 PRINTS Subtilisin serine protease family (S8) signature 559 575 IPR015500 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00577 Cme-Chr1:4409737 Cme06g02720 Cme-Chr6:34411012 0 dispersed
Cme12g00600 Cme-Chr12:10639491 Cme01g00577 Cme-Chr1:4409737 2.03E-161 dispersed
Cme01g00577 Cme-Chr1:4409737 Cme03g02092 Cme-Chr3:28252992 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00577 - - csv:101212884 1458.74