Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00585 ATGAACCGGACAAGTTTCATACTTACGTTTTGTACATATGCACGAGAGAAAGATCGGAAAATGGACGAGAAGAGAGAAATCAAAGAGCCACCAAGCTGCAATTTCTCATCTTCTGGTCATCAAATCAACCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCTGGAGATAGCCACTCCAAGGGTGAAGCCACTCACGAGCCAGATGAGCCAAAATCATCCCTCTCTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAAAAAGTGGATGGCATTTGAAAGTGAAAACTTTGATATAACAAAGATATACACAAAGAACTTCGATGGTAGCTTTAGGTCATATTCTACTAAACTATTGGAAACAAACATGACAAAAAGGACAGCAGAGGAGAATAAGATTGATCGTTTATCATCGCTTCAACTGACGTATGTTATCTCAGATGCAACAAAACCAGATTACCCTATCATGTTTGCCAGCAATAGGTTTTTGGCTATGACTGGATATACATTGGACGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCGGAGACAGATAAGAATGAAGTAGCTAAAATACGACATGCAATTAGAAAGGGGAATAGCTACTGTGGCAAGCTCTTAAACTACAAGAAAAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGACTCCCATGGCAGAATCATTAAATTTATTGGAATGCAGGTTGAGATTGCCAAAGACACAGAAGGAAAAGAGAAAACCGTGAGGTCCATTTCCATTACAGAGGTTCAAGCTGAGAGGGCAATTAGGTCCATTGTGGAGGTCGACACTGTGAAAAGTCTTAGATCTCACTGGCACGATGCTGATACAAAGCACCAAGGACCAGAAAAGACTAATGTTGATTATGCTCTGTCCAACGCTCTGGATAAGAAATTTAGCATAGCTGATAACCAAAAGGCTTGGTTCAAAGAAAGGACTCTAGGGTCTGCAGTAGAACGTAAAGAAAAGACAGTAGTTGAGACATCCTTTTTCAAGCCTAGGGATGGTGATCATGTTGCTAAAAGAGAAAGGGACATACGCCAAGGAACTGAGTTGGCTACTACATTGGAACGGATCGAGAAGATATTTTTTATCACTAATCCAAGACTTCCTGATAATCCTATTATATTTGCATCTCATAGGTTTCTTGATTCCACAGAATACACGCTTGAAGAAGTTCTGGGGAGAAACTTTTGTTTTCTTCAGGGACCTGAAACAGATCAAGCAACTGTCTCAAAGATAAACAATGCAATTGAAGAGCAGAGAGAAATCACTCTTAAGATAATCAACTACACAAAGAGTGGAAAAAAGTTCTCTAATTTATTCCACTTGCAACCCATGTGTGATCTAATGAAGGGCGAGCTTCAATATTTCATTGGTGTGCAAATTCATCAAAAACCTTCCAGAAACCGGCTTTTAGATCGGACAGAGCATGAAAGTGCAAAGCTGGCCAAAGCTGTAGCCGAAAATGTTGTCAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAACGAACTTCTGGGCAATCTACTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACAGCCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAATGTTGGACTCCATCATTTTAAGCCAATAAAACCTCTGGGTTTTGGAGACATTGGCAGTGTTCATTTGGTAGAACTGAAAGGAACAGGTGAACTCTTTGCCATGAAGGCTATAGAGAAGTCGGTAATATTAAATCGCAACAAGGTTCATCGAGCATGCATGGAAAGGGAAATCATATCACTTTTGGATCATCCTTTCATGCCAACTCTATACTCTTCATTTCAGACGTCTACACACATTTTTCTGATTATGGACTTCTGTCCCGGTGGAGAGTTATTTACCTTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAGGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTACCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCTGAAAACATTCTACTCCAGAAAGACGGACATATCATCCTCACTGATTTTGATTTATCATTTAAGACGTCTAACATACAAAGATTTATACCTTTCCTGCAGACCATAGAATCTTCACCCCCAAGAAAGAAGACATGTAGGCACAAATCATTGCCAATGTTCGTCGTTAAACCTATGGTGGAACTCAATTCATTCATTGGAACTGAAGAGTACATTGCCCCAGAGATCATAATGGGTGCAGGCCATGGTAGTTCTATTGACTGGTGGACTCTAGGTATCTTATTGTATGAAATGCTCTATGGGCGCACACCCTTCAAAGGAAAAAACAGGAATAAAACTTTTGCCAATATTTTGTACAAGGACTTGACCTTTCCCATTAGTATTCAGGTAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAAAGAGACCCGGCACGTCGTCTAGGATCAAGGACCGGTGCCGATGAGATCAAACGACATCCATTTTTCCGTGAAGTAAATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAATTGAGAGAGACCCAAAAGCTAATGATTTGAAGTGGGAAGATGGAATGCTCGGCCATTCAATGGGTTCTGCTAATGTTTTCTGA 2721 41.27 MNRTSFILTFCTYAREKDRKMDEKREIKEPPSCNFSSSGHQINPTEKRTPIEVFQVPASSGDSHSKGEATHEPDEPKSSLSSFRPAASMEASKKWMAFESENFDITKIYTKNFDGSFRSYSTKLLETNMTKRTAEENKIDRLSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIRHAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGRIIKFIGMQVEIAKDTEGKEKTVRSISITEVQAERAIRSIVEVDTVKSLRSHWHDADTKHQGPEKTNVDYALSNALDKKFSIADNQKAWFKERTLGSAVERKEKTVVETSFFKPRDGDHVAKRERDIRQGTELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKINNAIEEQREITLKIINYTKSGKKFSNLFHLQPMCDLMKGELQYFIGVQIHQKPSRNRLLDRTEHESAKLAKAVAENVVKAVRELPDANLKPTNFWAIYCQPVLPRPHKKYSPSWIAIQKITSHGENVGLHHFKPIKPLGFGDIGSVHLVELKGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTSTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILTDFDLSFKTSNIQRFIPFLQTIESSPPRKKTCRHKSLPMFVVKPMVELNSFIGTEEYIAPEIIMGAGHGSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILYKDLTFPISIQVSLAAKQLIDALLQRDPARRLGSRTGADEIKRHPFFREVNWPKIRTMTPPSPEVALQIIERDPKANDLKWEDGMLGHSMGSANVF 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4536223 4548720 + MELO3C024168.2.1 Cme01g00585 317561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00585 906 SUPERFAMILY Protein kinase-like (PK-like) 543 883 IPR011009 -
Cme01g00585 906 CDD PAS 161 250 IPR000014 -
Cme01g00585 906 ProSiteProfiles PAC domain profile. 208 262 IPR000700 -
Cme01g00585 906 ProSiteProfiles Protein kinase domain profile. 565 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00585 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 686 698 IPR008271 GO:0004672|GO:0006468
Cme01g00585 906 SUPERFAMILY PYP-like sensor domain (PAS domain) 382 481 IPR035965 -
Cme01g00585 906 Gene3D PAS domain 149 300 - -
Cme01g00585 906 TIGRFAM sensory_box: PAS domain S-box protein 161 252 IPR000014 -
Cme01g00585 906 ProSiteProfiles PAS repeat profile. 134 207 IPR000014 -
Cme01g00585 906 PANTHER PHOTOTROPIN-1 105 879 - -
Cme01g00585 906 Pfam Protein kinase domain 567 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00585 906 Gene3D Transferase(Phosphotransferase) domain 1 649 871 - -
Cme01g00585 906 PANTHER FLIPPASE KINASE 1-RELATED 105 879 - -
Cme01g00585 906 ProSiteProfiles PAS repeat profile. 367 440 IPR000014 -
Cme01g00585 906 SMART pas_2 369 438 IPR000014 -
Cme01g00585 906 SMART pas_2 136 205 IPR000014 -
Cme01g00585 906 SMART serkin_6 565 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00585 906 MobiDBLite consensus disorder prediction 31 45 - -
Cme01g00585 906 Gene3D PAS domain 356 517 - -
Cme01g00585 906 Pfam PAS domain 155 250 IPR000014 -
Cme01g00585 906 Pfam PAS domain 389 481 IPR000014 -
Cme01g00585 906 Gene3D Phosphorylase Kinase; domain 1 564 648 - -
Cme01g00585 906 SUPERFAMILY PYP-like sensor domain (PAS domain) 155 248 IPR035965 -
Cme01g00585 906 MobiDBLite consensus disorder prediction 18 83 - -
Cme01g00585 906 CDD STKc_phototropin_like 563 871 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00585 Cme-Chr1:4536223 Cme11g01018 Cme-Chr11:14646603 0 dispersed
Cme10g00448 Cme-Chr10:2847417 Cme01g00585 Cme-Chr1:4536223 1.15E-25 dispersed
Cme12g02054 Cme-Chr12:26044146 Cme01g00585 Cme-Chr1:4536223 1.03E-61 dispersed
Cme01g00585 Cme-Chr1:4536223 Cme11g01897 Cme-Chr11:27108962 1.11E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64599 PF00069 Pkinase 1.20E-62 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00585 K20715 - csv:101213364 1708.35