Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g00585 | ATGAACCGGACAAGTTTCATACTTACGTTTTGTACATATGCACGAGAGAAAGATCGGAAAATGGACGAGAAGAGAGAAATCAAAGAGCCACCAAGCTGCAATTTCTCATCTTCTGGTCATCAAATCAACCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCTGGAGATAGCCACTCCAAGGGTGAAGCCACTCACGAGCCAGATGAGCCAAAATCATCCCTCTCTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAAAAAGTGGATGGCATTTGAAAGTGAAAACTTTGATATAACAAAGATATACACAAAGAACTTCGATGGTAGCTTTAGGTCATATTCTACTAAACTATTGGAAACAAACATGACAAAAAGGACAGCAGAGGAGAATAAGATTGATCGTTTATCATCGCTTCAACTGACGTATGTTATCTCAGATGCAACAAAACCAGATTACCCTATCATGTTTGCCAGCAATAGGTTTTTGGCTATGACTGGATATACATTGGACGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCGGAGACAGATAAGAATGAAGTAGCTAAAATACGACATGCAATTAGAAAGGGGAATAGCTACTGTGGCAAGCTCTTAAACTACAAGAAAAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGACTCCCATGGCAGAATCATTAAATTTATTGGAATGCAGGTTGAGATTGCCAAAGACACAGAAGGAAAAGAGAAAACCGTGAGGTCCATTTCCATTACAGAGGTTCAAGCTGAGAGGGCAATTAGGTCCATTGTGGAGGTCGACACTGTGAAAAGTCTTAGATCTCACTGGCACGATGCTGATACAAAGCACCAAGGACCAGAAAAGACTAATGTTGATTATGCTCTGTCCAACGCTCTGGATAAGAAATTTAGCATAGCTGATAACCAAAAGGCTTGGTTCAAAGAAAGGACTCTAGGGTCTGCAGTAGAACGTAAAGAAAAGACAGTAGTTGAGACATCCTTTTTCAAGCCTAGGGATGGTGATCATGTTGCTAAAAGAGAAAGGGACATACGCCAAGGAACTGAGTTGGCTACTACATTGGAACGGATCGAGAAGATATTTTTTATCACTAATCCAAGACTTCCTGATAATCCTATTATATTTGCATCTCATAGGTTTCTTGATTCCACAGAATACACGCTTGAAGAAGTTCTGGGGAGAAACTTTTGTTTTCTTCAGGGACCTGAAACAGATCAAGCAACTGTCTCAAAGATAAACAATGCAATTGAAGAGCAGAGAGAAATCACTCTTAAGATAATCAACTACACAAAGAGTGGAAAAAAGTTCTCTAATTTATTCCACTTGCAACCCATGTGTGATCTAATGAAGGGCGAGCTTCAATATTTCATTGGTGTGCAAATTCATCAAAAACCTTCCAGAAACCGGCTTTTAGATCGGACAGAGCATGAAAGTGCAAAGCTGGCCAAAGCTGTAGCCGAAAATGTTGTCAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAACGAACTTCTGGGCAATCTACTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACAGCCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAATGTTGGACTCCATCATTTTAAGCCAATAAAACCTCTGGGTTTTGGAGACATTGGCAGTGTTCATTTGGTAGAACTGAAAGGAACAGGTGAACTCTTTGCCATGAAGGCTATAGAGAAGTCGGTAATATTAAATCGCAACAAGGTTCATCGAGCATGCATGGAAAGGGAAATCATATCACTTTTGGATCATCCTTTCATGCCAACTCTATACTCTTCATTTCAGACGTCTACACACATTTTTCTGATTATGGACTTCTGTCCCGGTGGAGAGTTATTTACCTTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAGGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTACCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCTGAAAACATTCTACTCCAGAAAGACGGACATATCATCCTCACTGATTTTGATTTATCATTTAAGACGTCTAACATACAAAGATTTATACCTTTCCTGCAGACCATAGAATCTTCACCCCCAAGAAAGAAGACATGTAGGCACAAATCATTGCCAATGTTCGTCGTTAAACCTATGGTGGAACTCAATTCATTCATTGGAACTGAAGAGTACATTGCCCCAGAGATCATAATGGGTGCAGGCCATGGTAGTTCTATTGACTGGTGGACTCTAGGTATCTTATTGTATGAAATGCTCTATGGGCGCACACCCTTCAAAGGAAAAAACAGGAATAAAACTTTTGCCAATATTTTGTACAAGGACTTGACCTTTCCCATTAGTATTCAGGTAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAAAGAGACCCGGCACGTCGTCTAGGATCAAGGACCGGTGCCGATGAGATCAAACGACATCCATTTTTCCGTGAAGTAAATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAATTGAGAGAGACCCAAAAGCTAATGATTTGAAGTGGGAAGATGGAATGCTCGGCCATTCAATGGGTTCTGCTAATGTTTTCTGA | 2721 | 41.27 | MNRTSFILTFCTYAREKDRKMDEKREIKEPPSCNFSSSGHQINPTEKRTPIEVFQVPASSGDSHSKGEATHEPDEPKSSLSSFRPAASMEASKKWMAFESENFDITKIYTKNFDGSFRSYSTKLLETNMTKRTAEENKIDRLSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIRHAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGRIIKFIGMQVEIAKDTEGKEKTVRSISITEVQAERAIRSIVEVDTVKSLRSHWHDADTKHQGPEKTNVDYALSNALDKKFSIADNQKAWFKERTLGSAVERKEKTVVETSFFKPRDGDHVAKRERDIRQGTELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKINNAIEEQREITLKIINYTKSGKKFSNLFHLQPMCDLMKGELQYFIGVQIHQKPSRNRLLDRTEHESAKLAKAVAENVVKAVRELPDANLKPTNFWAIYCQPVLPRPHKKYSPSWIAIQKITSHGENVGLHHFKPIKPLGFGDIGSVHLVELKGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTSTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILTDFDLSFKTSNIQRFIPFLQTIESSPPRKKTCRHKSLPMFVVKPMVELNSFIGTEEYIAPEIIMGAGHGSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILYKDLTFPISIQVSLAAKQLIDALLQRDPARRLGSRTGADEIKRHPFFREVNWPKIRTMTPPSPEVALQIIERDPKANDLKWEDGMLGHSMGSANVF | 906 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4536223 | 4548720 | + | MELO3C024168.2.1 | Cme01g00585 | 317561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g00585 | 906 | SUPERFAMILY | Protein kinase-like (PK-like) | 543 | 883 | IPR011009 | - | |
Cme01g00585 | 906 | CDD | PAS | 161 | 250 | IPR000014 | - | |
Cme01g00585 | 906 | ProSiteProfiles | PAC domain profile. | 208 | 262 | IPR000700 | - | |
Cme01g00585 | 906 | ProSiteProfiles | Protein kinase domain profile. | 565 | 857 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme01g00585 | 906 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 686 | 698 | IPR008271 | GO:0004672|GO:0006468 | |
Cme01g00585 | 906 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 382 | 481 | IPR035965 | - | |
Cme01g00585 | 906 | Gene3D | PAS domain | 149 | 300 | - | - | |
Cme01g00585 | 906 | TIGRFAM | sensory_box: PAS domain S-box protein | 161 | 252 | IPR000014 | - | |
Cme01g00585 | 906 | ProSiteProfiles | PAS repeat profile. | 134 | 207 | IPR000014 | - | |
Cme01g00585 | 906 | PANTHER | PHOTOTROPIN-1 | 105 | 879 | - | - | |
Cme01g00585 | 906 | Pfam | Protein kinase domain | 567 | 857 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme01g00585 | 906 | Gene3D | Transferase(Phosphotransferase) domain 1 | 649 | 871 | - | - | |
Cme01g00585 | 906 | PANTHER | FLIPPASE KINASE 1-RELATED | 105 | 879 | - | - | |
Cme01g00585 | 906 | ProSiteProfiles | PAS repeat profile. | 367 | 440 | IPR000014 | - | |
Cme01g00585 | 906 | SMART | pas_2 | 369 | 438 | IPR000014 | - | |
Cme01g00585 | 906 | SMART | pas_2 | 136 | 205 | IPR000014 | - | |
Cme01g00585 | 906 | SMART | serkin_6 | 565 | 857 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme01g00585 | 906 | MobiDBLite | consensus disorder prediction | 31 | 45 | - | - | |
Cme01g00585 | 906 | Gene3D | PAS domain | 356 | 517 | - | - | |
Cme01g00585 | 906 | Pfam | PAS domain | 155 | 250 | IPR000014 | - | |
Cme01g00585 | 906 | Pfam | PAS domain | 389 | 481 | IPR000014 | - | |
Cme01g00585 | 906 | Gene3D | Phosphorylase Kinase; domain 1 | 564 | 648 | - | - | |
Cme01g00585 | 906 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 155 | 248 | IPR035965 | - | |
Cme01g00585 | 906 | MobiDBLite | consensus disorder prediction | 18 | 83 | - | - | |
Cme01g00585 | 906 | CDD | STKc_phototropin_like | 563 | 871 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g00585 | Cme-Chr1:4536223 | Cme11g01018 | Cme-Chr11:14646603 | 0 | dispersed | |
Cme10g00448 | Cme-Chr10:2847417 | Cme01g00585 | Cme-Chr1:4536223 | 1.15E-25 | dispersed | |
Cme12g02054 | Cme-Chr12:26044146 | Cme01g00585 | Cme-Chr1:4536223 | 1.03E-61 | dispersed | |
Cme01g00585 | Cme-Chr1:4536223 | Cme11g01897 | Cme-Chr11:27108962 | 1.11E-102 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64599 | PF00069 | Pkinase | 1.20E-62 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g00585 | K20715 | - | csv:101213364 | 1708.35 |