Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00630 ATCCCTCATTTTGATCTCCCTCCCAAGATCCTATGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATCAAAGTGAGCCCCAAAACGCTGATCCAGAGCCACCTGAGCGTACAAGGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGAAAGCATGCCACTGAATGTCTTCCTTCCCTTGATATGAGTCAATCAACCCCAACGCAGGAGTTAGCTGCCAAGGATCTTCATGGTTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACAGGGTGGAGTACATTTGTTACATCAAAACGGCTGGTTGCTGGGGATGCTTTTGTTTTCTTAAGGGGTGACAATGGAGAACTGAGGGTTGGTGTTCGACGGCAGGCTCGGCAACAGAGTTTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGGGTTCTTGCCACTGCTTCTCATGCTGTTCGTACCCAGACCTATTTCGTTGTGTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTAAACAAATACTTGGAGACTGTTAAAAATGGTTATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAAGAATCACCAGAAAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATGTCCCCGCAATGGTCGGATTCGAAATGGCGATCTCTAAAGATTCAATGGGATGAACCTGCTACGATTCAGAGGCCTGAGCGAGTTTCTCCTTGGGAGATCGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCTATAAAAAGTAAAAGGGCCCGCCCCGTTGAGATTCCTCCTCCTGAAATTACTTCTGGTTCAGCTCCTTCGGGATTTTGGCTCCAAGGATCAACGATTCCTCACGAAATATCCCAAATAAGTGGTGGTACGAATGAAGTTCAAAGCAGCAACAATCGGGTTGTCTGGGCTCTTGGACAGCGAAAACTTGATAGCAATAGCAGCCATTGTAATCCAATAGCAAATGTTGAAGGTATTTGGCCTTCTCCTCCACTCAATATTTCCTTGAACCTTTACCCAGATTCAACATTTGAAAGAGAACTTGTTCAAAAACAGCCACAGTCCTCTCCTTATTCTTCATCTGTCACTTCGAAGCCTAGTAGTGACCTCATACATCCCGATCAATTGGAAAAAGGGAGTAAACCCGACATTTCTCTTGGTTGCCGAATATTTGGAATCGATTTGAAAAAGAACTCTAGCATTGTCCCTACTAACTCTAGCATTGTCCCTACCTTGGAAAGAAGATCGTCTTGCCTACTGATGGTGTCTGATGGTGCCCCAGAACCTGTAACTATGGCTGTCGTGACACCTCAAGTTGATGCAGGAAACCTCTCACAGCATTCAAAGGAGCAGCAACTCTCATCAGAGCTGTCGACAAAGGGAACACAAACAAAACACATCTCTAATCTATCGTCGAGAACACGTACAAAGGTGTAA 1596 44.36 IPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQNADPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPSLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSPQWSDSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPEITSGSAPSGFWLQGSTIPHEISQISGGTNEVQSSNNRVVWALGQRKLDSNSSHCNPIANVEGIWPSPPLNISLNLYPDSTFERELVQKQPQSSPYSSSVTSKPSSDLIHPDQLEKGSKPDISLGCRIFGIDLKKNSSIVPTNSSIVPTLERRSSCLLMVSDGAPEPVTMAVVTPQVDAGNLSQHSKEQQLSSELSTKGTQTKHISNLSSRTRTKV 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5358964 5362299 + MELO3C024138.2.1 Cme01g00630 317606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00630 531 MobiDBLite consensus disorder prediction 402 423 - -
Cme01g00630 531 Pfam Auxin response factor 187 266 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme01g00630 531 Gene3D - 223 294 - -
Cme01g00630 531 CDD B3_DNA 59 161 IPR003340 GO:0003677
Cme01g00630 531 SUPERFAMILY DNA-binding pseudobarrel domain 52 190 IPR015300 -
Cme01g00630 531 SMART B3_2 61 163 IPR003340 GO:0003677
Cme01g00630 531 Pfam B3 DNA binding domain 61 162 IPR003340 GO:0003677
Cme01g00630 531 PANTHER AUXIN RESPONSE FACTOR 11 2 531 - -
Cme01g00630 531 ProSiteProfiles B3 DNA-binding domain profile. 61 163 IPR003340 GO:0003677
Cme01g00630 531 MobiDBLite consensus disorder prediction 34 55 - -
Cme01g00630 531 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 531 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme01g00630 531 MobiDBLite consensus disorder prediction 494 531 - -
Cme01g00630 531 MobiDBLite consensus disorder prediction 402 432 - -
Cme01g00630 531 Gene3D - 58 163 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00630 Cme-Chr1:5358964 Cme07g01536 Cme-Chr7:21213391 9.42E-177 dispersed
Cme04g00660 Cme-Chr4:6836695 Cme01g00630 Cme-Chr1:5358964 1.12E-39 dispersed
Cme08g01644 Cme-Chr8:17411767 Cme01g00630 Cme-Chr1:5358964 4.58E-06 dispersed
Cme01g00630 Cme-Chr1:5358964 Cme08g00111 Cme-Chr8:821892 1.22E-95 transposed
Cme01g00630 Cme-Chr1:5358964 Cme12g01152 Cme-Chr12:19599255 1.94E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40724 PF02362 B3 1.40E-21 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00630 K14486 - csv:101205805 994.571