Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00671 ATGGGTCGAAAAAAGCCTACCGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCGAAGAAGAAGACATTTGCAGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAAGCGCAAATTCAGGAGGAGAAGGTTGTGATAACTGGGAAGAAGAAGGGTAAGAAGGGAAATTCGAAAGCTTCACAACTTAAAGAGGATGATGACGAAGACGATGGGGATGGTGTTTCAGAAATTGTTATTACTGGGAAGAAGAAAGGCAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATGGATGGTGCTGATGATGACGAAGAATCTGTGTTGACTGCAGAAAAGGATGATGATGATGAAGAGGAACATCCTGCGATCAAGTTTTCGGGCAAGAAGAAGTCTTCCAAATCTTCAAAGAAGAGTGGTTTTTCTGCAGTGTCGGCATTCACTGCCCTTGATGATGAGAATGACGAGGATGCGATTGATAATGAGATCAGGGTTGATGAAGATATTGATGAGCCTGTCGTTGAATTTACAGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCTTTGAGTGCATTTTCAGGTTTTAGTGGTCTTGACTATGAGGATGATGACAGAGATGATCAAAAAGATGAGGAGGATGTTGCATCAATTAGCTTCTCTGGTAAGAAAAAGAAGTCCGCTAAGGCTTCAAAGAAGAGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAACGATGGTGATGTTTCTATGTCAGAGACAAATAAATTAGACCATGATGGCGTTGATGAAGACGATGTTAATGTAATTGCATTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCAACAGTACTTTTACTGCATTAAGTGATGAAAATGCGCAGGGAAATGAAGCTAAAGATGTAGTCGTGCCTGAAATACATAATACAAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGACGATTTGGATAAGATTCTTGCTGAGCTAGGAGAAGGGCCTGCCATTTCAAAACCAGCAGATCCTCCTCTTTTATCCCAGGAGGCCAAAGTTGAAAATCCACCTGAGCTTGTAGCTCCTGCCGAAAAGGAAGCTGAAGAAGATAGCACAGAATCAGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAAAAGGCGGCAGCTGCTGCAGCTGCTGCTGAAGGGAATGATGAAAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCAAGAAGAAAAGAAGAGGAAGAGCGAAGGAAAAGGGAGGAAGAAGAGAGATTGAAAAAAGAAGAAGAAGAGAGGCTTAGGCTGGAAGAACTTGAAAGGCAAGCTGAAGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAGAAACTGGAAGGCAAGCTGTTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAAACAGATATTGTCAAATACAGGAGGTTTACCTCTGTCTACATCTGACCCCAGTGCACCAGCTAAGCGACCAAAATACCAGACAAAGAAGACAAAACCATCCCATCATCAAACAAATGGCAATGCACAAACTAAGGCCGTAGAACATATAGAAGAAAAAATACAAGAAAGAGATGTGGCAGAGACAGAAGTATTGGAGTCAGAGAAGATTGAAGCTGTTGAGTTGATGCATGTGGAGGAAAAGTCGGGGATTCTTGAGGCTACTGAAGATAATGAAATTCAAGAAGACGAGGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAGAGTTCCTTCGCTGATGAGGAGCTTGAATCTGAACCAGAGAATGACATGAAAAAGGATAGAAAGAATGGCGCAGGTGCCAAGCTAGCTGCTCCTGCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCCCAAGATATTGAAAACAAAAAGAAGCAGGACGAAGTTGAGGTTCCTGACAAGGGCGAAAGAAAAGAGGATGCTGTTAGGAAAAAAGCTTCAATTCCAGATGCCACTCCTGTACAACAGGAAGAAAATCTTCGCTCACCCATCTGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTACTAGACTGTATCCGTGGCACAAATGTTCAAGAAGGAGAAGCGGGAGGAATTACTCAGCAGATTGGGGCAACCTATTTTCCTGCTGAGAACATTCGGGAAAGAACTAGGGAACTGAAAGCTGATGCAAAACTGAAGGTTCCTGGCCTACTTATTATTGATACGCCTGGGCATGAGTCGTTTACGAACTTACGTTCTCGTGGTTCAGGCTTATGTGATCTCGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTGTTGCTTTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTCAAGACAATGAAGCAGCAAACTAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACGGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTCACTGGCGAAGGTATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACATATAGTGACGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGTCATGGAACAACTATTGATGTCATACTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATTGTAGTTTGTGGGATGCAGGGTCCAATTGTTACTACTATTCGAGCCCTATTGACACCCCATCCTATGAAGGAACTCCGGGTGAAGGGAACATATCTGCATCACAAGGAAATCAAGGCTGCTCAGGGGATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTTGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGAATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTATTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTCAGTGGAATAAGTATAGGACCTGTTCACAAAAAAGATGTCATGAAAGCTAGTGTGATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTAACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATCTTTATTGCTGATATCATTTATCACTTGTTCGACCAATTCAAGGCCTATATTGATAACCTCAAGGAGGAAAAGAAGAAAGAAGCTGCCGAGGAAGCAGTCTTTCCTTGTGTTCTCAAAATTTTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGCTGGGGGTCGATGTGATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGATTTTATTGACATTGGTCGCATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCGATTAAGATAGTTGGGCATTCCTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCCAATTATCGGGATGATTTGTCCACGGATGAATGGAGACTTGTGGTGAAATTGAAGAATCTTTTCAAGATACAATGA 3999 42.09 MGRKKPTARDDDSAPAAAHGGGKSKKKTFAVDDDEYSIGTELSEEAQIQEEKVVITGKKKGKKGNSKASQLKEDDDEDDGDGVSEIVITGKKKGKSKKGGSSSAFTASSFGLLEEEGMDGADDDEESVLTAEKDDDDEEEHPAIKFSGKKKSSKSSKKSGFSAVSAFTALDDENDEDAIDNEIRVDEDIDEPVVEFTGKKKSSKGGKKALSAFSGFSGLDYEDDDRDDQKDEEDVASISFSGKKKKSAKASKKSGNLFSAALADEENDGDVSMSETNKLDHDGVDEDDVNVIAFSGKKKSSKKKSNSTFTALSDENAQGNEAKDVVVPEIHNTKKSGRTAQEEDDLDKILAELGEGPAISKPADPPLLSQEAKVENPPELVAPAEKEAEEDSTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLKKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRKQILSNTGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTKAVEHIEEKIQERDVAETEVLESEKIEAVELMHVEEKSGILEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENDMKKDRKNGAGAKLAAPAQKGLPSQSIKSQDIENKKKQDEVEVPDKGERKEDAVRKKASIPDATPVQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5961747 5972998 + MELO3C023716.2.1 Cme01g00671 317647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00671 1332 MobiDBLite consensus disorder prediction 616 736 - -
Cme01g00671 1332 CDD IF2_aeIF5B_IV 1203 1298 - -
Cme01g00671 1332 Pfam Elongation factor Tu GTP binding domain 744 952 IPR000795 GO:0003924|GO:0005525
Cme01g00671 1332 Gene3D Translation factors 1195 1332 - -
Cme01g00671 1332 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1332 - -
Cme01g00671 1332 Coils Coil 390 417 - -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 116 137 - -
Cme01g00671 1332 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1332 IPR015760 -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 327 351 - -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 626 643 - -
Cme01g00671 1332 TIGRFAM small_GTP: small GTP-binding protein domain 745 871 IPR005225 GO:0005525
Cme01g00671 1332 MobiDBLite consensus disorder prediction 380 401 - -
Cme01g00671 1332 CDD aeIF5B_II 964 1074 - -
Cme01g00671 1332 Gene3D - 1082 1188 IPR036925 -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 1 602 - -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 170 189 - -
Cme01g00671 1332 CDD IF2_eIF5B 743 953 - -
Cme01g00671 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 740 1031 IPR027417 -
Cme01g00671 1332 Gene3D - 734 962 IPR027417 -
Cme01g00671 1332 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1065 1194 IPR036925 -
Cme01g00671 1332 Pfam Translation-initiation factor 2 1069 1181 IPR023115 -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 271 293 - -
Cme01g00671 1332 Pfam Elongation factor Tu domain 2 979 1056 IPR004161 GO:0005525
Cme01g00671 1332 PRINTS GTP-binding elongation factor signature 808 818 IPR000795 GO:0003924|GO:0005525
Cme01g00671 1332 PRINTS GTP-binding elongation factor signature 744 757 IPR000795 GO:0003924|GO:0005525
Cme01g00671 1332 PRINTS GTP-binding elongation factor signature 824 835 IPR000795 GO:0003924|GO:0005525
Cme01g00671 1332 PRINTS GTP-binding elongation factor signature 860 869 IPR000795 GO:0003924|GO:0005525
Cme01g00671 1332 Gene3D Translation factors 963 1081 - -
Cme01g00671 1332 Coils Coil 1177 1197 - -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 656 678 - -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 698 726 - -
Cme01g00671 1332 SUPERFAMILY Translation proteins 1199 1331 IPR009000 -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 422 536 - -
Cme01g00671 1332 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 740 956 IPR000795 GO:0003924|GO:0005525
Cme01g00671 1332 Coils Coil 451 515 - -
Cme01g00671 1332 MobiDBLite consensus disorder prediction 583 602 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00671 Cme-Chr1:5961747 Cme07g00769 Cme-Chr7:7029760 2.44E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00671 K03243 - csv:101204360 1541.55