Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g00679 | ATGCTGATGGACCCTAATTTCTCGTCGGCGAAGCCACCCCATCCGGTGGCCATGGACATCGAACATATGCCGGAAAATCCTCATCGTGCTTCCCACCACCGCCGCTCCCACTCCGATACTTCCTTCCGCTTCCCAAACCTTGATGAACTTCTCTTCTTCGACCCTTCCGAGCTCGACCTCTCCATGCTCTCTTCCCCTTCTTCTCCCCCTACTGCCGCCACTGTCATGGCCGTTGATTCCTCTGATGCCAAGTTTTCTGATGACGCCGTTCGCCCTAAGCCCGAGCCGATTGCATCTGGACCTTTCGGTGGTCACTTACGGAGCTTGTCTATGGACTCTGATTTCTTCAAGAATTTGGACCTTGGTGGTGATACTGGGGAAATCGATTCTTTGGGGAAGAAGACTCCGGTGAGTGAACAACGGCCAGTTCGTCATCGACATAGCTTATCCATGGATGGTTCGTCGTCGTCGTTTGAGGCTGATTCAACCCTAGTGATTGATGGAGTGAAGAAGGCAATGGACCCGGAGAGACTTGCGGAGCTTGCTCTAATTGACCCGAAAAGAGCTAAAAGGATTCTTGCGAACAGACAATCTGCGGCTCGTTCGAAAGAGAGGAAGATACGATACACGAATGAACTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACTAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGACTTAGAATAGCCGCTGGCCAGGTTGCATCGATCAATGGAAATCCTTTCAACCGACCTCTGCAATATCCTTCATCCCGACCACCTGTACACCATTTTAGTAGCTCCCATGCTCAGCAGGGTCAACAGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAATCAGACCCAAAATGGACAAACTCCTCTCTGCTTCTAAGTCGAAGTCCTGATGGCCAAGCAAAACCTTAG | 1056 | 50.47 | MLMDPNFSSAKPPHPVAMDIEHMPENPHRASHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPTAATVMAVDSSDAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDTGEIDSLGKKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVASINGNPFNRPLQYPSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSSLLLSRSPDGQAKP | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 6132062 | 6135471 | + | MELO3C023710.2.1 | Cme01g00679 | 317655 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g00679 | 351 | Coils | Coil | 238 | 258 | - | - | |
| Cme01g00679 | 351 | Coils | Coil | 210 | 230 | - | - | |
| Cme01g00679 | 351 | Gene3D | - | 186 | 239 | - | - | |
| Cme01g00679 | 351 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 328 | - | - | |
| Cme01g00679 | 351 | MobiDBLite | consensus disorder prediction | 287 | 351 | - | - | |
| Cme01g00679 | 351 | MobiDBLite | consensus disorder prediction | 85 | 104 | - | - | |
| Cme01g00679 | 351 | CDD | bZIP_plant_RF2 | 188 | 237 | IPR044759 | GO:0003700|GO:0006355 | |
| Cme01g00679 | 351 | Pfam | bZIP transcription factor | 187 | 234 | IPR004827 | GO:0003700|GO:0006355 | |
| Cme01g00679 | 351 | SUPERFAMILY | Leucine zipper domain | 187 | 238 | IPR046347 | GO:0003700|GO:0006355 | |
| Cme01g00679 | 351 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 185 | 248 | IPR004827 | GO:0003700|GO:0006355 | |
| Cme01g00679 | 351 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cme01g00679 | 351 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED | 7 | 328 | - | - | |
| Cme01g00679 | 351 | MobiDBLite | consensus disorder prediction | 302 | 344 | - | - | |
| Cme01g00679 | 351 | SMART | brlzneu | 183 | 247 | IPR004827 | GO:0003700|GO:0006355 | |
| Cme01g00679 | 351 | MobiDBLite | consensus disorder prediction | 126 | 155 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00679 | Cme-Chr1:6132062 | Cme03g00331 | Cme-Chr3:4324576 | 5.11E-122 | dispersed | |
| Cme01g00679 | Cme-Chr1:6132062 | Cme01g00456 | Cme-Chr1:3307587 | 9.49E-22 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 40726 | PF00170 | bZIP_1 | 5.90E-08 | CL0018 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g00679 | K20557 | - | csv:101207973 | 637.491 |