Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00679 ATGCTGATGGACCCTAATTTCTCGTCGGCGAAGCCACCCCATCCGGTGGCCATGGACATCGAACATATGCCGGAAAATCCTCATCGTGCTTCCCACCACCGCCGCTCCCACTCCGATACTTCCTTCCGCTTCCCAAACCTTGATGAACTTCTCTTCTTCGACCCTTCCGAGCTCGACCTCTCCATGCTCTCTTCCCCTTCTTCTCCCCCTACTGCCGCCACTGTCATGGCCGTTGATTCCTCTGATGCCAAGTTTTCTGATGACGCCGTTCGCCCTAAGCCCGAGCCGATTGCATCTGGACCTTTCGGTGGTCACTTACGGAGCTTGTCTATGGACTCTGATTTCTTCAAGAATTTGGACCTTGGTGGTGATACTGGGGAAATCGATTCTTTGGGGAAGAAGACTCCGGTGAGTGAACAACGGCCAGTTCGTCATCGACATAGCTTATCCATGGATGGTTCGTCGTCGTCGTTTGAGGCTGATTCAACCCTAGTGATTGATGGAGTGAAGAAGGCAATGGACCCGGAGAGACTTGCGGAGCTTGCTCTAATTGACCCGAAAAGAGCTAAAAGGATTCTTGCGAACAGACAATCTGCGGCTCGTTCGAAAGAGAGGAAGATACGATACACGAATGAACTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACTAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGACTTAGAATAGCCGCTGGCCAGGTTGCATCGATCAATGGAAATCCTTTCAACCGACCTCTGCAATATCCTTCATCCCGACCACCTGTACACCATTTTAGTAGCTCCCATGCTCAGCAGGGTCAACAGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAATCAGACCCAAAATGGACAAACTCCTCTCTGCTTCTAAGTCGAAGTCCTGATGGCCAAGCAAAACCTTAG 1056 50.47 MLMDPNFSSAKPPHPVAMDIEHMPENPHRASHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPTAATVMAVDSSDAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDTGEIDSLGKKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVASINGNPFNRPLQYPSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSSLLLSRSPDGQAKP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6132062 6135471 + MELO3C023710.2.1 Cme01g00679 317655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00679 351 Coils Coil 238 258 - -
Cme01g00679 351 Coils Coil 210 230 - -
Cme01g00679 351 Gene3D - 186 239 - -
Cme01g00679 351 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 328 - -
Cme01g00679 351 MobiDBLite consensus disorder prediction 287 351 - -
Cme01g00679 351 MobiDBLite consensus disorder prediction 85 104 - -
Cme01g00679 351 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700|GO:0006355
Cme01g00679 351 Pfam bZIP transcription factor 187 234 IPR004827 GO:0003700|GO:0006355
Cme01g00679 351 SUPERFAMILY Leucine zipper domain 187 238 IPR046347 GO:0003700|GO:0006355
Cme01g00679 351 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700|GO:0006355
Cme01g00679 351 MobiDBLite consensus disorder prediction 1 21 - -
Cme01g00679 351 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 7 328 - -
Cme01g00679 351 MobiDBLite consensus disorder prediction 302 344 - -
Cme01g00679 351 SMART brlzneu 183 247 IPR004827 GO:0003700|GO:0006355
Cme01g00679 351 MobiDBLite consensus disorder prediction 126 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00679 K20557 VIP1; transcription factor VIP1 - csv:101207973 637.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00679 Cme-Chr1:6132062 Cme03g00331 Cme-Chr3:4324576 5.11E-122 dispersed
Cme01g00679 Cme-Chr1:6132062 Cme01g00456 Cme-Chr1:3307587 9.49E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01717 . 89 318 bZIP Transcription Factor Family AT5G24800 50.2 2.4e-45 179.5
Cme06g02439 CCT 1 343 bZIP Transcription Factor Family AT2G35530 68.2 5.0e-108 388.3
Cme04g00153 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.1 1.1e-99 360.5
Cme10g01249 CCT,ECH 16 344 bZIP Transcription Factor Family AT2G40620 58.5 8.2e-86 314.3
Cme03g00331 CCT,ECH 170 321 bZIP Transcription Factor Family AT2G40620 65.1 4.3e-42 169.1
Cme01g01318 . 397 521 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Cme01g01319 . 394 518 bZIP Transcription Factor Family AT2G40620 69.6 8.4e-38 154.8
Cme11g00379 CCT 1 262 bZIP Transcription Factor Family AT4G35040 57.2 1.3e-64 243.4
Cme01g01263 CCT 1 232 bZIP Transcription Factor Family AT4G35040 62.6 1.2e-59 226.9
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT5G06950 76.7 3.1e-132 468.4
Cme03g00783 . 135 480 bZIP Transcription Factor Family AT5G06950 67.6 3.4e-115 411.8
Cme04g02110 . 137 555 bZIP Transcription Factor Family AT5G06950 58.0 1.3e-109 393.3
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT5G06950 57.9 2.5e-86 315.8
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT5G06950 56.3 3.8e-82 302.0
Cme07g01733 . 43 360 bZIP Transcription Factor Family AT5G06950 50.6 2.4e-76 282.7
Cme04g02220 . 224 470 bZIP Transcription Factor Family AT5G06950 58.6 7.2e-73 271.2
Cme12g00629 . 166 490 bZIP Transcription Factor Family AT1G08320 72.3 1.3e-128 456.4
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT1G08320 67.9 2.0e-100 362.8
Cme03g01483 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.1e-98 355.1
Cme10g00013 . 44 331 bZIP Transcription Factor Family AT1G08320 61.1 3.0e-93 339.0
Cme03g00783 . 196 480 bZIP Transcription Factor Family AT1G08320 58.9 1.7e-88 323.2
Cme04g02220 . 201 470 bZIP Transcription Factor Family AT1G08320 56.3 9.2e-74 274.2
Cme11g00379 CCT 1 261 bZIP Transcription Factor Family AT2G16770 58.4 7.1e-65 244.2
Cme01g01263 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.2 3.7e-61 231.9
Cme03g01483 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 1.8e-129 459.1
Cme10g00013 . 32 331 bZIP Transcription Factor Family AT5G06960 77.3 9.6e-120 426.8
Cme03g00783 . 161 480 bZIP Transcription Factor Family AT5G06960 65.3 2.2e-103 372.5
Cme04g02110 . 170 555 bZIP Transcription Factor Family AT5G06960 56.5 8.8e-97 350.5
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT5G06960 56.8 2.5e-83 305.8
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT5G06960 55.6 3.3e-80 295.4
Cme07g01733 . 53 360 bZIP Transcription Factor Family AT5G06960 52.2 4.7e-74 275.0
Cme04g02220 . 205 470 bZIP Transcription Factor Family AT5G06960 57.4 1.8e-73 273.1
Cme01g01319 . 1 564 bZIP Transcription Factor Family AT4G38900 56.0 1.3e-132 470.3
Cme01g01318 . 1 519 bZIP Transcription Factor Family AT4G38900 59.9 8.7e-132 467.6
Cme03g00331 CCT,ECH 115 306 bZIP Transcription Factor Family AT4G38900 56.3 1.5e-38 157.9
Cme01g00679 . 101 282 bZIP Transcription Factor Family AT4G38900 54.9 6.2e-37 152.5
Cme10g01249 CCT,ECH 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.1e-37 152.1
Cme06g00865 CCT 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cme01g01319 . 2 534 bZIP Transcription Factor Family AT2G21230 50.2 4.4e-101 365.5
Cme01g01318 . 65 547 bZIP Transcription Factor Family AT2G21230 53.2 1.4e-99 360.5
Cme01g00679 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 6.9e-38 155.6
Cme01g00456 . 1 246 bZIP Transcription Factor Family AT2G42380 56.1 4.4e-60 228.4
Cme03g02053 . 6 353 bZIP Transcription Factor Family AT1G45249 54.3 1.0e-84 310.8
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT3G12250 76.4 3.4e-131 464.9
Cme03g00783 . 135 480 bZIP Transcription Factor Family AT3G12250 66.2 4.2e-113 404.8
Cme04g02110 . 137 555 bZIP Transcription Factor Family AT3G12250 58.4 1.6e-109 392.9
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT3G12250 57.9 3.7e-85 312.0
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT3G12250 57.3 1.7e-82 303.1
Cme07g01733 . 46 360 bZIP Transcription Factor Family AT3G12250 52.6 6.3e-77 284.6
Cme04g02220 . 224 470 bZIP Transcription Factor Family AT3G12250 58.2 5.5e-73 271.6
Cme03g00783 . 15 480 bZIP Transcription Factor Family AT1G68640 60.7 5.5e-140 494.6
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 1.2e-115 413.7
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT1G68640 64.7 4.5e-110 395.2
Cme04g02110 . 135 555 bZIP Transcription Factor Family AT1G68640 52.4 1.0e-98 357.5
Cme12g00629 . 183 461 bZIP Transcription Factor Family AT1G68640 57.4 5.9e-86 315.1
Cme11g01914 . 187 481 bZIP Transcription Factor Family AT1G68640 52.6 8.3e-80 294.7
Cme04g02220 . 212 470 bZIP Transcription Factor Family AT1G68640 53.2 1.0e-69 261.2
Cme03g00331 CCT,ECH 31 346 bZIP Transcription Factor Family AT1G43700 53.3 3.6e-67 252.3
Cme01g00679 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Cme06g00865 CCT 42 370 bZIP Transcription Factor Family AT2G31370 71.2 1.4e-115 413.3
Cme06g00875 . 43 360 bZIP Transcription Factor Family AT2G31370 67.4 1.6e-103 373.2
Cme10g01249 CCT,ECH 25 248 bZIP Transcription Factor Family AT2G31370 52.5 5.1e-49 192.2
Cme01g00456 . 1 246 bZIP Transcription Factor Family AT3G58120 50.9 1.5e-55 213.4
Cme03g01118 . 17 296 bZIP Transcription Factor Family AT3G56850 55.2 1.3e-60 230.3
Cme06g02439 CCT 1 345 bZIP Transcription Factor Family AT1G32150 62.9 5.3e-99 358.2
Cme04g00153 CCT 1 345 bZIP Transcription Factor Family AT1G32150 61.3 9.3e-96 347.4
Cme06g00865 CCT 10 366 bZIP Transcription Factor Family AT1G06070 69.7 1.4e-124 443.4
Cme06g00875 . 1 358 bZIP Transcription Factor Family AT1G06070 67.7 2.9e-119 425.6
Cme01g01319 . 383 545 bZIP Transcription Factor Family AT1G06070 58.1 1.5e-38 157.5
Cme01g01318 . 385 529 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
Cme03g02053 . 6 353 bZIP Transcription Factor Family AT1G45249 54.3 1.0e-84 310.8
Cme06g02439 CCT 1 343 bZIP Transcription Factor Family AT2G35530 68.2 5.0e-108 388.3
Cme04g00153 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.1 1.1e-99 360.5
Cme10g01249 CCT,ECH 16 344 bZIP Transcription Factor Family AT2G40620 58.5 8.2e-86 314.3
Cme03g00331 CCT,ECH 170 321 bZIP Transcription Factor Family AT2G40620 65.1 4.3e-42 169.1
Cme01g01318 . 397 521 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Cme01g01319 . 394 518 bZIP Transcription Factor Family AT2G40620 69.6 8.4e-38 154.8
Cme11g00379 CCT 1 262 bZIP Transcription Factor Family AT4G35040 57.2 1.3e-64 243.4
Cme01g01263 CCT 1 232 bZIP Transcription Factor Family AT4G35040 62.6 1.2e-59 226.9
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT5G06950 76.7 3.1e-132 468.4
Cme03g00783 . 135 480 bZIP Transcription Factor Family AT5G06950 67.6 3.4e-115 411.8
Cme04g02110 . 137 555 bZIP Transcription Factor Family AT5G06950 58.0 1.3e-109 393.3
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT5G06950 57.9 2.5e-86 315.8
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT5G06950 56.3 3.8e-82 302.0
Cme07g01733 . 43 360 bZIP Transcription Factor Family AT5G06950 50.6 2.4e-76 282.7
Cme04g02220 . 224 470 bZIP Transcription Factor Family AT5G06950 58.6 7.2e-73 271.2
Cme12g00629 . 166 490 bZIP Transcription Factor Family AT1G08320 72.3 1.3e-128 456.4
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT1G08320 67.9 2.0e-100 362.8
Cme03g01483 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.1e-98 355.1
Cme10g00013 . 44 331 bZIP Transcription Factor Family AT1G08320 61.1 3.0e-93 339.0
Cme03g00783 . 196 480 bZIP Transcription Factor Family AT1G08320 58.9 1.7e-88 323.2
Cme04g02220 . 201 470 bZIP Transcription Factor Family AT1G08320 56.3 9.2e-74 274.2
Cme11g00379 CCT 1 261 bZIP Transcription Factor Family AT2G16770 58.4 7.1e-65 244.2
Cme01g01263 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.2 3.7e-61 231.9
Cme03g01483 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 1.8e-129 459.1
Cme10g00013 . 32 331 bZIP Transcription Factor Family AT5G06960 77.3 9.6e-120 426.8
Cme03g00783 . 161 480 bZIP Transcription Factor Family AT5G06960 65.3 2.2e-103 372.5
Cme04g02110 . 170 555 bZIP Transcription Factor Family AT5G06960 56.5 8.8e-97 350.5
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT5G06960 56.8 2.5e-83 305.8
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT5G06960 55.6 3.3e-80 295.4
Cme07g01733 . 53 360 bZIP Transcription Factor Family AT5G06960 52.2 4.7e-74 275.0
Cme04g02220 . 205 470 bZIP Transcription Factor Family AT5G06960 57.4 1.8e-73 273.1
Cme01g01319 . 1 564 bZIP Transcription Factor Family AT4G38900 56.0 1.3e-132 470.3
Cme01g01318 . 1 519 bZIP Transcription Factor Family AT4G38900 59.9 8.7e-132 467.6
Cme03g00331 CCT,ECH 115 306 bZIP Transcription Factor Family AT4G38900 56.3 1.5e-38 157.9
Cme01g00679 . 101 282 bZIP Transcription Factor Family AT4G38900 54.9 6.2e-37 152.5
Cme10g01249 CCT,ECH 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.1e-37 152.1
Cme06g00865 CCT 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cme01g01319 . 2 534 bZIP Transcription Factor Family AT2G21230 50.2 4.4e-101 365.5
Cme01g01318 . 65 547 bZIP Transcription Factor Family AT2G21230 53.2 1.4e-99 360.5
Cme01g00679 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 6.9e-38 155.6
Cme01g00456 . 1 246 bZIP Transcription Factor Family AT2G42380 56.1 4.4e-60 228.4
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT3G12250 76.4 3.4e-131 464.9
Cme03g00783 . 135 480 bZIP Transcription Factor Family AT3G12250 66.2 4.2e-113 404.8
Cme04g02110 . 137 555 bZIP Transcription Factor Family AT3G12250 58.4 1.6e-109 392.9
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT3G12250 57.9 3.7e-85 312.0
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT3G12250 57.3 1.7e-82 303.1
Cme07g01733 . 46 360 bZIP Transcription Factor Family AT3G12250 52.6 6.3e-77 284.6
Cme04g02220 . 224 470 bZIP Transcription Factor Family AT3G12250 58.2 5.5e-73 271.6
Cme03g00783 . 15 480 bZIP Transcription Factor Family AT1G68640 60.7 5.5e-140 494.6
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 1.2e-115 413.7
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT1G68640 64.7 4.5e-110 395.2
Cme04g02110 . 135 555 bZIP Transcription Factor Family AT1G68640 52.4 1.0e-98 357.5
Cme12g00629 . 183 461 bZIP Transcription Factor Family AT1G68640 57.4 5.9e-86 315.1
Cme11g01914 . 187 481 bZIP Transcription Factor Family AT1G68640 52.6 8.3e-80 294.7
Cme04g02220 . 212 470 bZIP Transcription Factor Family AT1G68640 53.2 1.0e-69 261.2
Cme03g00331 CCT,ECH 31 346 bZIP Transcription Factor Family AT1G43700 53.3 3.6e-67 252.3
Cme01g00679 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Cme06g00865 CCT 42 370 bZIP Transcription Factor Family AT2G31370 71.2 1.4e-115 413.3
Cme06g00875 . 43 360 bZIP Transcription Factor Family AT2G31370 67.4 1.6e-103 373.2
Cme10g01249 CCT,ECH 25 248 bZIP Transcription Factor Family AT2G31370 52.5 5.1e-49 192.2
Cme01g00456 . 1 246 bZIP Transcription Factor Family AT3G58120 50.9 1.5e-55 213.4
Cme03g01118 . 17 296 bZIP Transcription Factor Family AT3G56850 55.2 1.3e-60 230.3
Cme06g02439 CCT 1 345 bZIP Transcription Factor Family AT1G32150 62.9 5.3e-99 358.2
Cme04g00153 CCT 1 345 bZIP Transcription Factor Family AT1G32150 61.3 9.3e-96 347.4
Cme06g00865 CCT 10 366 bZIP Transcription Factor Family AT1G06070 69.7 1.4e-124 443.4
Cme06g00875 . 1 358 bZIP Transcription Factor Family AT1G06070 67.7 2.9e-119 425.6
Cme01g01319 . 383 545 bZIP Transcription Factor Family AT1G06070 58.1 1.5e-38 157.5
Cme01g01318 . 385 529 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
Cme03g01717 . 89 318 bZIP Transcription Factor Family AT5G24800 50.2 2.4e-45 179.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001960 2 2 1 0 1 2 3 2 2 2 2 2 3 2 2 4 2 3 3 2 3 2 1 2 2 2 2 5 4 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40726 PF00170 bZIP_1 5.90E-08 CL0018 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00679 Cme_Chr01 FPKM 75.148125 89.548943 57.692028 54.965363 46.189812 48.29726 44.771545 74.743675 78.201431 75.389259