Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00709 ATGTCGTTAGTCAGGCCATCTGATCCATCTCCATTATCATATGGGAGTCGCAAGCTTTACTCATTGAAGGGAACTAGTAGTGCTCCTGACTTGTCCACACAAAGATTTGGCTCTGAAAAACATAGAACAATGTATATGAATGATACATATTGCAGTGAGAGCTATGAGAAGTATTTCCTCGACTTCCCAATAGAAGAGCTAGCGATTTCTGGCATTTCTACCAATTCTTGTCACCCCAACGCTTGGGTTGATTCTCTATCCCCCTTGTGTAATTCATTTACACTTTTTGATGCTTGTCAATCAACTTCAGACTCGGCCTGCCTTGAGAGTACAAGTCCAGAAGAGCTTGATTTTGAGGATGATCAAGTGAGACGGAAGTTGCAAGAATTGGAAAGAGATCTGCTGGGTGACCCCGATGCTGCGGATTATGATGTTGAGATGCTTACAAACGGCCAGAACATGGAAATTGATAGCGAATGGGCAAATTCAATTCAAGATACACTGCTTCATGACTCGCCGAAGGAATCTTCATCATCAGATTCTAATTTCAGTACCATCAGTAGCAATAAGGATGCATCTCAGCTATCTTCACAGAATCCAAGACAAATGCTTTTAGAATGTGCTTTTGCTATCTCAGAAGAGAACTATGAAGAAGCGTCAGCCATGATAAAACAGCTTCGATGTGTGGTCTCGATTCAGGGAGATCCTTCACAGAGGATTGCTGCGTATATGGTGGAAGGTCTTGCTGCTCGGTTGTTGGAATCAGGAAAATGTCTTTATAAAGCTTTGAGATGTAAAGAACCCCCTTCCTCCGACCGTCTCGCTGCTATGCAGATCCTTTTCGAGGTCTGCCCCTGTTTCAAGTTTGGCTTTATGGCTGCAAATTGTGCGATTCTTGAGGCAGCCAAAGATGAGAAGAAAATTCACATAATCGATTTTGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGTTTGCAGCTCTGCCAGGTAAGCCACCACACTTGAGGTTAACAGGGGTTGATGACCCCGAATCCGTACAGCGCCCCATTGGAGGTCTTAGGCACATTGGACAAAGGCTTGAGCAACTGGCAAAAGCACTACGGGTTCCATTTGAATTTCGTGCGATTGCCTCAAATGCTTCTGACGTTACACCCTCAATGCTTGCCTCCAAGCCTGGAGAAGCACTCATAGTGAACTTTGCTTTTCTGCTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCAACGAGACAGGCTTCTCCGGATGGTGAAGAGCTTGAACCCAAAATTGGTAACAGTTGTCGAACAGGACATGAACACAAACACCACCCCATTCTTCTCAAGATTCGTTGAAGCTTATAACTACTATGCAGCTGTTTACGATTCTCTCGATGCAACACTCCCAAGAGATAGTCAAGACAGAATAAACGTAGAAAGCCAATGCTTAGCAAAGGACATCGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAGTAGAGAGATACGAAGTGGCCGGGAAATGGCGGGCAAGAATGATGATGGCAGGCTTCACTTCTTGTTCGATGAGCCAAAACGTGACCGACCCAATTCGTAAACTTATCGAGGAGTATTGTGACAGATTCAAGATGTATGAGGAAATGGGGACACTTCATTTTGGATGGGAAGAGAAAAGCTTGATTGTTACATCAGCGTGGAGGTAA 1713 43.96 MSLVRPSDPSPLSYGSRKLYSLKGTSSAPDLSTQRFGSEKHRTMYMNDTYCSESYEKYFLDFPIEELAISGISTNSCHPNAWVDSLSPLCNSFTLFDACQSTSDSACLESTSPEELDFEDDQVRRKLQELERDLLGDPDAADYDVEMLTNGQNMEIDSEWANSIQDTLLHDSPKESSSSDSNFSTISSNKDASQLSSQNPRQMLLECAFAISEENYEEASAMIKQLRCVVSIQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAILEAAKDEKKIHIIDFDVSQGTQYIKLIQMFAALPGKPPHLRLTGVDDPESVQRPIGGLRHIGQRLEQLAKALRVPFEFRAIASNASDVTPSMLASKPGEALIVNFAFLLHHMPDESVSTVNQRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRINVESQCLAKDIVNIVACEGEERVERYEVAGKWRARMMMAGFTSCSMSQNVTDPIRKLIEEYCDRFKMYEEMGTLHFGWEEKSLIVTSAWR 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6656238 6659613 - MELO3C023684.2.1 Cme01g00709 317685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00709 570 MobiDBLite consensus disorder prediction 169 197 - -
Cme01g00709 570 Pfam GRAS domain family 201 570 IPR005202 -
Cme01g00709 570 ProSiteProfiles GRAS family profile. 191 570 IPR005202 -
Cme01g00709 570 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 569 IPR030011 GO:0003700|GO:0005634
Cme01g00709 570 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 569 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00709 Cme-Chr1:6656238 Cme11g00929 Cme-Chr11:12896452 7.07E-150 dispersed
Cme11g02451 Cme-Chr11:31236842 Cme01g00709 Cme-Chr1:6656238 2.90E-48 dispersed
Cme01g00709 Cme-Chr1:6656238 Cme12g00163 Cme-Chr12:1573520 6.99E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40727 PF03514 GRAS 5.50E-131 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00709 - - csv:101206511 1105.12