Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00723 ATGATAAAGCAAGCGCACTCATCGATTCAAATTCCCAACGAAATCCAGTTTATCGGATTCGGAACCATTACCAAACTTACATTTTTTTCCTCCATCCTTCATCCCTCTTCCGCCTTACAAGTCAGACCGCTGGGGAACCTCACTTCCACACGTTCCCGGAGCCATCATCGCCGGCATCCCATGGCCGCCGCCACCTCTTCATCCTCCTCCAACACTTCTATTTTCTCCCCCGATTCTCCCCCCACACTTGCTCTCAAACCCCATCAGATTAAGCTTTGTTCCCAAGCTCTTGAGGCCTTCACGGACAAGCTCCAGAAGCCTGATGTCATCAACCAGGAGTTCGCTCGATTGCAGGCCAAGAGAATAACTGCATCTGATATGAGGAGAAGTTGCTCTGTGGCACTTGACAACGTCAACGTAAATAAAAATCGTTACATGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGTAAGGGGTTATATCAATGCTAGCTTTATTTCGACTTCCTCCTCAAAAAGCCTTTCTAAGTTTATTGCCACACAAGGTCCGTTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTGTATCTAAATGGATAAAATCTTCCAACTCCTCTCTTATATTGCGCCATTTGGAGGTGAACCATAAAGAGTCGGAAGAATCTGTGGCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGTTGAAGAGGCTGTATCATTTACCTCCCGATCTTGGTCGAATAGTGGTGCATTGCAGGTATATCCTATGCTCATCATGGTACATTCAAGTAGTGCTCGTTCACTTTATCTGGGGTTATTTCACTTCTTCAGTGCAGGTATTGGAAGAACCGGAACATATTGCGCAATTCATAACACAATTCAGAGAATTCTTATTGGAGACATGTCTGCTTTAG 1113 43.49 MIKQAHSSIQIPNEIQFIGFGTITKLTFFSSILHPSSALQVRPLGNLTSTRSRSHHRRHPMAAATSSSSSNTSIFSPDSPPTLALKPHQIKLCSQALEAFTDKLQKPDVINQEFARLQAKRITASDMRRSCSVALDNVNVNKNRYMDVLPFDETRVVLDSCKDYRPSVRGYINASFISTSSSKSLSKFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMVKCGDYFQAEDGPRDFGNLIVVSKWIKSSNSSLILRHLEVNHKESEESVAVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGRIVVHCRYILCSSWYIQVVLVHFIWGYFTSSVQVLEEPEHIAQFITQFREFLLETCLL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7018220 7031061 + MELO3C023674.2.1 Cme01g00723 317699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00723 370 ProSiteProfiles PTP type protein phosphatase domain profile. 110 318 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 Pfam Protein-tyrosine phosphatase 139 319 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 320 IPR029021 -
Cme01g00723 370 SMART PTPc_3 109 369 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 MobiDBLite consensus disorder prediction 61 79 - -
Cme01g00723 370 MobiDBLite consensus disorder prediction 49 79 - -
Cme01g00723 370 PRINTS Protein tyrosine phosphatase signature 188 208 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 PRINTS Protein tyrosine phosphatase signature 170 177 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 PRINTS Protein tyrosine phosphatase signature 275 292 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 Gene3D Protein tyrosine phosphatase superfamily 81 325 IPR029021 -
Cme01g00723 370 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 61 319 - -
Cme01g00723 370 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 61 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00723 Cme-Chr1:7018220 Cme01g00724 Cme-Chr1:7018230 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00723 - - bhj:120086129 526.939