Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00723 ATGATAAAGCAAGCGCACTCATCGATTCAAATTCCCAACGAAATCCAGTTTATCGGATTCGGAACCATTACCAAACTTACATTTTTTTCCTCCATCCTTCATCCCTCTTCCGCCTTACAAGTCAGACCGCTGGGGAACCTCACTTCCACACGTTCCCGGAGCCATCATCGCCGGCATCCCATGGCCGCCGCCACCTCTTCATCCTCCTCCAACACTTCTATTTTCTCCCCCGATTCTCCCCCCACACTTGCTCTCAAACCCCATCAGATTAAGCTTTGTTCCCAAGCTCTTGAGGCCTTCACGGACAAGCTCCAGAAGCCTGATGTCATCAACCAGGAGTTCGCTCGATTGCAGGCCAAGAGAATAACTGCATCTGATATGAGGAGAAGTTGCTCTGTGGCACTTGACAACGTCAACGTAAATAAAAATCGTTACATGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGTAAGGGGTTATATCAATGCTAGCTTTATTTCGACTTCCTCCTCAAAAAGCCTTTCTAAGTTTATTGCCACACAAGGTCCGTTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTGTATCTAAATGGATAAAATCTTCCAACTCCTCTCTTATATTGCGCCATTTGGAGGTGAACCATAAAGAGTCGGAAGAATCTGTGGCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGTTGAAGAGGCTGTATCATTTACCTCCCGATCTTGGTCGAATAGTGGTGCATTGCAGGTATATCCTATGCTCATCATGGTACATTCAAGTAGTGCTCGTTCACTTTATCTGGGGTTATTTCACTTCTTCAGTGCAGGTATTGGAAGAACCGGAACATATTGCGCAATTCATAACACAATTCAGAGAATTCTTATTGGAGACATGTCTGCTTTAG 1113 43.49 MIKQAHSSIQIPNEIQFIGFGTITKLTFFSSILHPSSALQVRPLGNLTSTRSRSHHRRHPMAAATSSSSSNTSIFSPDSPPTLALKPHQIKLCSQALEAFTDKLQKPDVINQEFARLQAKRITASDMRRSCSVALDNVNVNKNRYMDVLPFDETRVVLDSCKDYRPSVRGYINASFISTSSSKSLSKFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMVKCGDYFQAEDGPRDFGNLIVVSKWIKSSNSSLILRHLEVNHKESEESVAVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGRIVVHCRYILCSSWYIQVVLVHFIWGYFTSSVQVLEEPEHIAQFITQFREFLLETCLL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7018220 7031061 + MELO3C023674.2.1 Cme01g00723 317699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00723 370 ProSiteProfiles PTP type protein phosphatase domain profile. 110 318 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 Pfam Protein-tyrosine phosphatase 139 319 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 320 IPR029021 -
Cme01g00723 370 SMART PTPc_3 109 369 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 MobiDBLite consensus disorder prediction 61 79 - -
Cme01g00723 370 MobiDBLite consensus disorder prediction 49 79 - -
Cme01g00723 370 PRINTS Protein tyrosine phosphatase signature 188 208 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 PRINTS Protein tyrosine phosphatase signature 170 177 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 PRINTS Protein tyrosine phosphatase signature 275 292 IPR000242 GO:0004725|GO:0006470
Cme01g00723 370 Gene3D Protein tyrosine phosphatase superfamily 81 325 IPR029021 -
Cme01g00723 370 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 61 319 - -
Cme01g00723 370 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 61 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00723 - - - bhj:120086129 526.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00723 Cme-Chr1:7018220 Cme01g00724 Cme-Chr1:7018230 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008867 1 2 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00723 Cme_Chr01 FPKM 74.867203 78.157143 42.433773 45.946957 14.276855 12.661992 12.5736 18.598013 18.549116 20.296297