Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00724 ATGATAAAGCAAGCGCACTCATCGATTCAAATTCCCAACGAAATCCAGTTTATCGGATTCGGAACCATTACCAAACTTACATTTTTTTCCTCCATCCTTCATCCCTCTTCCGCCTTACAAGTCAGACCGCTGGGGAACCTCACTTCCACACGTTCCCGGAGCCATCATCGCCGGCATCCCATGGCCGCCGCCACCTCTTCATCCTCCTCCAACACTTCTATTTTCTCCCCCGATTCTCCCCCCACACTTGCTCTCAAACCCCATCAGATTAAGCTTTGTTCCCAAGCTCTTGAGGCCTTCACGGACAAGCTCCAGAAGCCTGATGTCATCAACCAGGAGTTCGCTCGATTGCAGGCCAAGAGAATAACTGCATCTGATATGAGGAGAAGTTGCTCTGTGGCACTTGACAACGTCAACGTAAATAAAAATCGTTACATGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGTAAGGGGTTATATCAATGCTAGCTTTATTTCGACTTCCTCCTCAAAAAGCCTTTCTAAGTTTATTGCCACACAAGGTCCGTTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTGTATCTAAATGGATAAAATCTTCCAACTCCTCTCTTATATTGCGCCATTTGGAGGTGAACCATAAAGAGTCGGAAGAATCTGTGGCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGTTGAAGAGGCTGTATCATTTACCTCCCGATCTTGGTCGAATAGTGGTGCATTGCAGTGCAGGTATTGGAAGAACCGGAACATATTGCGCAATTCATAACACAATTCAGAGAATTCTTATTGGAGACATGTCTGCTTTAGATCTTGTCAGTACCATTTCTTCATTTAGGTCCCAGCGAATTGGAATGGTTCAAACCCTGGATCAATACTTTTTCTGCTATAGAACTATCGTTGATGAACTAGAAGACCTTATAGCTGTTTCACAGTAG 1167 43.19 MIKQAHSSIQIPNEIQFIGFGTITKLTFFSSILHPSSALQVRPLGNLTSTRSRSHHRRHPMAAATSSSSSNTSIFSPDSPPTLALKPHQIKLCSQALEAFTDKLQKPDVINQEFARLQAKRITASDMRRSCSVALDNVNVNKNRYMDVLPFDETRVVLDSCKDYRPSVRGYINASFISTSSSKSLSKFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMVKCGDYFQAEDGPRDFGNLIVVSKWIKSSNSSLILRHLEVNHKESEESVAVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGRIVVHCSAGIGRTGTYCAIHNTIQRILIGDMSALDLVSTISSFRSQRIGMVQTLDQYFFCYRTIVDELEDLIAVSQ 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7018230 7030955 + MELO3C018159.2.1 Cme01g00724 317700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00724 388 MobiDBLite consensus disorder prediction 61 79 - -
Cme01g00724 388 ProSitePatterns Tyrosine specific protein phosphatases active site. 316 326 IPR016130 GO:0016311|GO:0016791
Cme01g00724 388 ProSiteProfiles PTP type protein phosphatase domain profile. 110 379 IPR000242 GO:0004725|GO:0006470
Cme01g00724 388 MobiDBLite consensus disorder prediction 49 79 - -
Cme01g00724 388 PRINTS Protein tyrosine phosphatase signature 170 177 IPR000242 GO:0004725|GO:0006470
Cme01g00724 388 PRINTS Protein tyrosine phosphatase signature 188 208 IPR000242 GO:0004725|GO:0006470
Cme01g00724 388 PRINTS Protein tyrosine phosphatase signature 275 292 IPR000242 GO:0004725|GO:0006470
Cme01g00724 388 PRINTS Protein tyrosine phosphatase signature 313 331 IPR000242 GO:0004725|GO:0006470
Cme01g00724 388 PRINTS Protein tyrosine phosphatase signature 346 361 IPR000242 GO:0004725|GO:0006470
Cme01g00724 388 PRINTS Protein tyrosine phosphatase signature 362 372 IPR000242 GO:0004725|GO:0006470
Cme01g00724 388 CDD PTPc_plant_PTP1 171 373 - -
Cme01g00724 388 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 61 385 - -
Cme01g00724 388 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 298 370 IPR000387 GO:0016311|GO:0016791
Cme01g00724 388 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 61 385 - -
Cme01g00724 388 SMART ptp_7 276 378 IPR003595 -
Cme01g00724 388 SMART PTPc_3 109 381 IPR000242 GO:0004725|GO:0006470
Cme01g00724 388 Gene3D Protein tyrosine phosphatase superfamily 81 384 IPR029021 -
Cme01g00724 388 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 380 IPR029021 -
Cme01g00724 388 Pfam Protein-tyrosine phosphatase 139 377 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00723 Cme-Chr1:7018220 Cme01g00724 Cme-Chr1:7018230 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00724 - - bhj:120086129 655.981