Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00730 GCTCAGACTCGAGAAAGTCTTCACAGACTGCTCCTCTTCCTCTTTAGTTACAAACCCACTTCATTCTTTTTCTCTCTCTCTCTAGGATTTGGAGCAGCCATCGAAGAAGTGATTGAAATCGATCTAAATCAAACATTGCTGAATCTTTGTGGTAGAGAAAAGGTTTTTGAGATGGAACCTGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCTTCTTTTCCTAATAATAATGTTCAGCAACCTCCACAAAAGTGGCCAGATACTTCCATTTTAGACTATGCTATGGATCAACCTTTTCAAGAATTTCAAGAACGGACTGAATCGAAGGCCTCCCTAGCCTGTAACCCGAATCAACAAATTGAAATCCTAGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGACCCGAGGGCCATGCTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCATTTGATCGTTGGTCGGAGAAGCCAAGTCTTTGGGAGGCCAGATGAACTCGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCGATTATTGTTCAGTTGATCTCCACTGCGGGTAGTCTGCTTCCATCTGTAAAGCATAACTTGTCTGCTGCTGTTCCTCCAGTCGGGCAGCTGGAGCAGTTTAACAAGGTTATTTTTGCGTCTGAACCCGGGACCAATGGTGGTGTTCAGTCACAACATGGTGATGGAGCTAAACTCCCCGAATTCCCATCCCAAGTGGACGGAAGTAGCAAGTGTGGGAAGGAACAGAACATGACTGTTGAAGAACACGAATCAAAGGACGAAGAAGATGCAGATGAAAACGAGAACCTACCACCAGGTTCATATGAAATATTGCAGCTAGAAAAAGAAGAGATTCTAGCTCCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAAAGAGATGCAAATTTACGAATGCACATGAGGGGCCATGGTGACGAGTATAAAACCGCCGCTGCCCTTGCAAAGCCAAACAAAGAATTGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCCTTTACCGGCTGCAAGCGGAACAAGGAACACAAGAAGTTTCAACCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCAAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGACGAGTCGAAGGGAGCCGCCATGTCTTGTGATCGAGGAGAACGCTATGAAACAACGAATAAGCTTGGGAGTATAAATTTCAGTTTTGGGTCGATTGCTTCTGGAGGAAGCTCAGTTGAAACCATAGCAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCACCTTTGAACTTTGATTCGTGTAATTTTGGTGGCTTTCACGAGTTTCCTCGACCGCCATTCGAGAACACAGACAATGCTTTTTCGTTCCTTATCCCTGGATCTGGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTAATAACCTTGAATGA 1710 43.1 AQTRESLHRLLLFLFSYKPTSFFFSLSLGFGAAIEEVIEIDLNQTLLNLCGREKVFEMEPEDSLCSSEVWTKSSSFPNNNVQQPPQKWPDTSILDYAMDQPFQEFQERTESKASLACNPNQQIEILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPPVGQLEQFNKVIFASEPGTNGGVQSQHGDGAKLPEFPSQVDGSSKCGKEQNMTVEEHESKDEEDADENENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKELGSETMLIKRYSCPFTGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAAMSCDRGERYETTNKLGSINFSFGSIASGGSSVETIADAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPGSGNYTQKSGAESSSNNLE 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7159658 7162303 - MELO3C023668.2.1 Cme01g00730 317706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00730 569 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 58 552 IPR044300 GO:0010044|GO:0010447
Cme01g00730 569 SUPERFAMILY beta-beta-alpha zinc fingers 314 342 IPR036236 -
Cme01g00730 569 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 58 552 - -
Cme01g00730 569 Gene3D Classic Zinc Finger 301 370 - -
Cme01g00730 569 Coils Coil 566 569 - -
Cme01g00730 569 MobiDBLite consensus disorder prediction 243 297 - -
Cme01g00730 569 ProSitePatterns Zinc finger C2H2 type domain signature. 318 338 IPR013087 -
Cme01g00730 569 SMART c2h2final6 365 398 IPR013087 -
Cme01g00730 569 SMART c2h2final6 403 425 IPR013087 -
Cme01g00730 569 SMART c2h2final6 316 338 IPR013087 -
Cme01g00730 569 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 343 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00730 Cme-Chr1:7159658 Cme08g00763 Cme-Chr8:5101980 5.45E-82 dispersed
Cme01g00730 Cme-Chr1:7159658 Cme03g01971 Cme-Chr3:27590275 5.45E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40728 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00730 - - csv:101220745 1019.99