Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00754 ATGAGCCTGGCATGTCTTGTATGCAATAGCGTAGAGAGCCCTTCACACTCGTTCAGGAGCTATTCGGTTTCGAGTTCAGACAATGAGGGAAGATGTTCTGCAATGGCCAACTGCCTAATATGGAGACCATCTTTTCCTCCAACACACCACCCGTCATATGCAGCATCAGCCAAGGTAACTCCCCAACCAACCATTTCCAACAGCAATGTAATGGATGGAACGCCAAGGTTGGTGCGGAGCCGGGCAGTAAAAAGGGACCTGGTACGAGACTGGAATTTCGATGAGGTGGTTGTAGTTCAGCATTAG 306 49.35 MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVTPQPTISNSNVMDGTPRLVRSRAVKRDLVRDWNFDEVVVVQH 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7578186 7582455 - MELO3C023649.2.1 Cme01g00754 317730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00754 101 PANTHER PYRD 1 99 - -
Cme01g00754 101 MobiDBLite consensus disorder prediction 55 72 - -
Cme01g00754 101 MobiDBLite consensus disorder prediction 52 72 - -
Cme01g00754 101 PANTHER PYRD 1 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00754 - - - csv:101218997 194.126
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1292 . Blo12g00767 . Bda03g00415 Bpe02g00189 Bpe04g00381 Bma04g00392 . . . . . Car01g00844 . . Cpe06g00923 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00849 . . . . . Sed10g1776 Cmo01g00976 . . . . . . . Bhi09g01569 Tan01g2978 Cmetu01g1659 . . . . . . . . . . . . . . Cme01g00754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008868 2 2 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00754 Cme_Chr01 FPKM 2.28043 1.696904 9.470472 8.831674 69.185814 76.266548 72.838791 7.458993 7.931187 7.027435