Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00777 ATGGAAGCTGCAACTCTCCAGCTTCGAATCCACATCTCCATTGGAACACTCGCAATGTTTCTTCTCAAGGCATGGAGACTATCAGCTTTTGGGGTCTATGGCTACCTCAACTTCACCAAATCTGCATTCATTGAACATTCTAAGATGTTCAAACCAGAGGATATGCAAACGAACATTGAAGGGAAAAATTGCATTGTTACCGGGGCGAATTCCGGGATTGGATATGCAACTGCAGAGGGTTTAGCATCACGTGGAGCTACTGTCTACATGATATGCCGCAGCAAGGAAAGAGGAGAAGCTGCTCTTTCCGAGATAAAGTCTAAAACAGGAAACCAAAATGTTCATTTGGAGGTCTGTGATCTTTCCTCAATCAGGGACATTAAGTCATTTTCCTCAAATTTTATTTCAAAGAATGTCCCAGTCCACGTTCTGGTTAACAATGCTGGATTGCTTGAGAAAAATCGGATTACGACGTCTGAAGGGTTCGAATTGAACTTTGCTGTGAATGTTTTAGGCACTTATGCAATGACTGAATCATTGTTGCCATTGCTGGAGAAAGCTGCACCTGATGCAAAGGTCATCACAGTTTCTTCTGGTGGAATGTATTCAGTTCCCTTAACCGATGATCTGCAGTTTAGTGAAGACCAATTTGATGGGGCCATACAGTATGCACTTAACAAACGAGTTCAGGTGGCTTTAACAGAGAAATGGGCAGAGATGTACTCTAAAAAAGGGATTGGATTCTACTCGATGCACCCCGGTTGGGCCGAAACACCCGGAGTGACTAAATCTTTACCGAGTTTCTCTAAATCTCTCTCGGGGAAGCTAAGAACGAGCGAGGAAGGGGCCGATACGATTATTTGGTTGGCTTTACAGCCAAAAGAGAAGTTGGTACCTGGAGCATTCTACTTTGATAGAAGGGTAGCACCAAAGCATTTAGCTTTTGCCGCTACGCAGTCTTCTCATACAGCAATGGGCTCTATATATGATCATCTTCGTTCTTTGTCTGGCTTGGCTCAATAA 1023 43.6 MEAATLQLRIHISIGTLAMFLLKAWRLSAFGVYGYLNFTKSAFIEHSKMFKPEDMQTNIEGKNCIVTGANSGIGYATAEGLASRGATVYMICRSKERGEAALSEIKSKTGNQNVHLEVCDLSSIRDIKSFSSNFISKNVPVHVLVNNAGLLEKNRITTSEGFELNFAVNVLGTYAMTESLLPLLEKAAPDAKVITVSSGGMYSVPLTDDLQFSEDQFDGAIQYALNKRVQVALTEKWAEMYSKKGIGFYSMHPGWAETPGVTKSLPSFSKSLSGKLRTSEEGADTIIWLALQPKEKLVPGAFYFDRRVAPKHLAFAATQSSHTAMGSIYDHLRSLSGLAQ 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8003590 8016025 + MELO3C024061.2.1 Cme01g00777 317753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00777 340 Gene3D - 48 332 - -
Cme01g00777 340 PRINTS Glucose/ribitol dehydrogenase family signature 63 80 IPR002347 -
Cme01g00777 340 PRINTS Glucose/ribitol dehydrogenase family signature 139 150 IPR002347 -
Cme01g00777 340 PRINTS Glucose/ribitol dehydrogenase family signature 223 242 IPR002347 -
Cme01g00777 340 PRINTS Glucose/ribitol dehydrogenase family signature 244 261 IPR002347 -
Cme01g00777 340 PRINTS Glucose/ribitol dehydrogenase family signature 272 292 IPR002347 -
Cme01g00777 340 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 25 331 - -
Cme01g00777 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 60 310 IPR036291 -
Cme01g00777 340 PANTHER RETINOL DEHYDROGENASE 25 331 - -
Cme01g00777 340 Pfam short chain dehydrogenase 62 263 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00777 K11168 DHRS12; dehydrogenase/reductase SDR family member 12 [EC:1.1.-.-] - csv:101217652 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00777 Cme-Chr1:8003590 Cme02g01995 Cme-Chr2:26200919 4.01E-27 dispersed
Cme09g01214 Cme-Chr9:17032478 Cme01g00777 Cme-Chr1:8003590 3.86E-11 dispersed
Cme12g02032 Cme-Chr12:25826989 Cme01g00777 Cme-Chr1:8003590 1.97E-15 dispersed
Cme01g00777 Cme-Chr1:8003590 Cme09g01920 Cme-Chr9:23301248 4.15E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1333 . Blo12g00773 . Bda03g00406 . Bpe04g00370 Bma04g00386 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0769 Cone20ag0359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00777
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009720 3 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00777 Cme_Chr01 FPKM 3.611635 3.824772 0.722315 1.096564 6.331473 4.872876 7.43979 0.611649 0.903941 0.782182