Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00793 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTTTCTCTCTCCTCTACCCTTTCTTCATACTCCCAATTTCCAATTTCACACAATCTGATTCACTTCCCCTTTTCAATTCCTCACTTTCCACCCATTTTCGATCTCTTCTTCTTGTTCATGTTACAATGCCTGCCACTGATTTTCAAGGTTCTTCCTCGCCGTTAACCAACATTGGCCGTTCCATCTTCAGTCTCCGCCGCGATCAAGTTCATTCCATGGAAGGGGGTTCTCACGACGGCATCGTTTTGGACTCTGACCTTGATTCCTTCCAGAAGCAGGTCACTCAACACTTCCAGGATTTGTCGTCGGCTTCTTCTGATGATATTTTGTCGCTCTCCTGGATTCGGAAGCTTTTGGATGCTTTCATTTGCTGTCAGGAGGAATTTAAGATTATTTTGTTTGGGCATAAGGCGCAAATTTGTAGACCTCCGATGGATAGGATGGTTTCGGATTACTTGGAGAGGAGTGTGAAGGCGCTCGATGTTTGTAATGTGATTAGAGATGGGATTGAGCAGTTGAGGCAGTGGCAGAAGTTGTTGGAGATTGTGCTTAGTGCTTTGGATAATTCTAGTCACAAGAAGATTCTTGGCGAGGGCCAATTTCGCCGTGCGAAGAAGGCTTTGATTGACTTAGCCATTGCAATGCTCGACGAAAATGATGCCAATTCTCCGGCTATTGCTCAGAGAAACCGTTCATTTGGACGTAATAACGGTACCAGAGACCGTAGGTCTTTGGGGCATTTCCGTTCGCTTTCATGGAGTGTTTCGCGTTCCTGGTCAGCCGCTAGGCAGCTACAGGCAATTGGGAGCAATTTGGCTGCTCCGAGAGCGAATGAGATTGTGCTTACGAATGGGCTTGCGGTCCCTGTATTCACCATGAACATGGTATTGCTGTTTGTAACGTGGGCTTTGATAGCGGCGATTCCTTGCCAGGACCGTGGCTTACATGTTCATTTTTCGCTTCCCAGACAGTTCTCATGGGCGGCGCCAATGCTTTCTCTTCACGATCGGATTTTGGAAGAATCGAGACGGCGGGAAAGAAGAAATGCATGTGGGTTGTTGAAGGAGATTCATCAGATTGATAAATTTGCGCATATTATGAATGAATTGGCTGATACAGCACAATTCCCTTTGACAAACGAAAGGGAAGAAGAGGTGAGGCGAAGAGTGCAGGAGCTATCTCAGATTTGTGAAACATTGAAGATTGGCTTGGATCCTCTGGAACATCAAATTAGAGAGGTGTTTCATCGAATTGTGCGCTCAAGAACTGAAGGGCTTGATTGTTTAGGACGAGGAAATACCCATGAATAG 1341 46.01 SLSLSLSLSLCFSLLYPFFILPISNFTQSDSLPLFNSSLSTHFRSLLLVHVTMPATDFQGSSSPLTNIGRSIFSLRRDQVHSMEGGSHDGIVLDSDLDSFQKQVTQHFQDLSSASSDDILSLSWIRKLLDAFICCQEEFKIILFGHKAQICRPPMDRMVSDYLERSVKALDVCNVIRDGIEQLRQWQKLLEIVLSALDNSSHKKILGEGQFRRAKKALIDLAIAMLDENDANSPAIAQRNRSFGRNNGTRDRRSLGHFRSLSWSVSRSWSAARQLQAIGSNLAAPRANEIVLTNGLAVPVFTMNMVLLFVTWALIAAIPCQDRGLHVHFSLPRQFSWAAPMLSLHDRILEESRRRERRNACGLLKEIHQIDKFAHIMNELADTAQFPLTNEREEEVRRRVQELSQICETLKIGLDPLEHQIREVFHRIVRSRTEGLDCLGRGNTHE 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8313771 8316016 + MELO3C024075.2.1 Cme01g00793 317769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00793 446 Pfam Protein ROH1-like 53 439 IPR008511 -
Cme01g00793 446 PANTHER BPS1-LIKE PROTEIN 53 443 - -
Cme01g00793 446 PANTHER OS04G0688000 PROTEIN 53 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00793 - - - csv:101216228 735.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00793 Cme-Chr1:8313771 Cme03g00305 Cme-Chr3:3924318 0 dispersed
Cme01g00793 Cme-Chr1:8313771 Cme11g02186 Cme-Chr11:29185552 9.58E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1374 Blo01g01729 Blo12g00785 . Bda03g00392 Bpe02g00212 Bpe04g00354 Bma04g00370 Bma01g02508 . . . . . . . Cpe06g00909 . . . . . . . . . . . . . . . . . Cone17ag0783 . . . . . . . Bda11g00873 . . . . . . . . . . . . . . Bhi09g01534 . . . . Mch11g1487 . . . . . . . . . . . Cme01g00793
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001452 2 8 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 2 2 2 2 2 2 2 1 2 4 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00793 Cme_Chr01 FPKM 1.849899 1.688504 29.315996 26.229546 11.885771 10.466431 11.562684 4.662643 4.680927 3.683304