Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00868 ATGGGAAAGAGACGAGAGCGTCGCCTTGCAGCTCTCAGCAACGTCGGTCGACGTGTCAAACTCGATCTTTTCGCCGAGCCCTCTGGAGATTTAGATGGCTCTGATGGACATGAAGAAGTTGGAGGGGATATTGATACAAGACAGACAATCAAGTTACCTAAATCAGCATCCTCTTCAGGTCACCAAACCCAAAATCCCTTGCTGTTACTTGAGCAATATAGTGATGATGACATCGATGGCGACTTGAATAAAAATTCAGATCAGGATGGACAAGATGATTTGTTACCTGAGCGCAATGATGAGGTTGCTGCAGTTGCTACTGAGGGATGTGAGAATATGGATACAAATGTTGGTGAAGATCTCATTGCTGAAAAGACTGTTCAGGAAGAATCAGAACGAGGTTCTGTTGAAATTTCTGAGAACATGGAGAGTAAAGATGAAGCAAAAACTAACACTAACAGCTTAGGATGTTTAAGCAAGGAAAGTGATCTGTTTCAAACATCTGTACCAACCACATCTAATGTACAAGTCTCAGGGGATGTTATTTCAGGGTGGAGGATTGTTATGCATGAGGAGAGCCATAATTATTATTACTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTACCCGATGTTGTTTTGACTCAGGCTCAACCTACTCAATCGACCACTGATATTAAAACATCTCCTACTCAATTTCCCGAGAATGTTACAGTATTTAAACAGGAATCTGGTTTAACTAATGGTGGGAAGTTAGGTGCTTTTTCAGCAGAAAGCACAGGTTACAATAATAGTGTTCCAGTAACTGCAAGTCAGGGTTCTGAGGTTGACCAAAGCTATGCTGCCTTAAGTACCTGTTCAAATGATGTGAATATAACAAAAGCTGCTTCTGAGATCTATGTTGATTACACAGTGACTAATGAAGAACTAAAATCATCAGGGTTGGATCTTCCTTCCCATCTTCTGACCCGTAGTGCGAGCTTGTTTGAGAAATTGAAATCATTACAAAAGTCTGGAGGTCATGAATGGACATCTAAGTACATATTGGAAACTCAGGTTAGACTTTCAGATTTTATGTCACTGATGCCCTATAAGACATCGTTGGTTCCATTTTGGGAACACTCAGCAAGGAAGCTTAAACAGATTGAAGAAGACGTTAATAAAGAAATTTATCAGTCTGCTGCTGTATCATCCCAATTGGATGAAGCCAAGACTACTGATAGTCCAAAGATTGTAAGAGTGGAGACATTTCAGGAAAGGTCAAATGTTGAGTCTGAAGTAGAGAGAGTGGCAAACAGTGGTGTCTCTGCTTTGGAGCATTCTCATTTGCCTACTGATTCTGCTTCTTTGAAACTCCAAGAGGACCAATGCCATGTAACTATCATTGCAAATGGAGAAAATGTTTCACCATCTAAAGCCATTGACCAGTTAGGAAACTCTACAGTTGTGACTGAGCATGCAAGTGAAGTTGCAACCGATGAAATGGCTTCCAAGAGTGGTGTACATTCTGTGGAAGATGTCGACATGGAGGTGGATATGGAAGTTGAAGATGCTAGTTCTGCAGGTAACTTGATGATGGCTGGTACGTCAGACTCGTGTGCAACTTTCTTGGAGCAACCGCTTCAGCCAGATCCACCAGTCCATCCAAATCTTTCCTCTGGATATGCATACATGTTATCAGAGGATGGCTCTATAGCACCACCGCCACCACCACCGGATGAGGAATGGATTCCCCCACCACCACCTGATAATGAAGATGTTTCTCCACCCCCACCTGATGAGCCAGCTGAGCCATTATATCCTATGGCTCCATCTTATACCCAACTTGGGCAGCCTCTTTGTTACACCGAACCGTATCGAGTGTCCTACCCTGATTCTAGTATTAAGTATTATGCACATCCTGCCCCTGAAGTTGTCCCTACTGCAGACTTCTATGGACATCCGGAAGCATGTAACGTTGTTTTGGCTCAAGCACCATTTTACTATGAGCCAGTTCCGAATTCGCATACTGATTCTGCTTCCATAGTTGTAAATGGTGTTTTGCCTGAAGGTTATGGTATTCTTCAAAATGCAACAGCCACTCTTCCCATCTTTAGTACAACAGAGCCTTCGCAGTTGCATGTTGATTCCTCATCTGCAAGTTTGCATCCTTCTTCCTCTGTTCAATATGGATCTTCTGATGCAGCAAATATGAATAATGCTTCCGCTGCGGATGAAATTGACAAGAGACGTGGAGAGACCACAACAGCCTCTTTCCGAGCATCAACTTCAGGTTCCCCAACTAATGATGTTCTGCCAACAAATAAAGCTGTTACTGATTCTTCCTCTGTTGCTAATGCATCCGCAGTTTCCAAGGTTCAACCAAAAGCCCTGCGCAGCAAAAAGCGGACAGTTACAGTCGCTCCCTCCTTGAGATCAAATAAGAAAGTTTCAAGTTTGTTGGACAAGTGGAAAGCAGCAAAAGAAGAACTCGAAGATGAGGAAGAACCAGAAAATGCTTATGAGATTCTAGAGAGGAAACGAGAAAGGGAAATAAAAGAATGGCATGCACAGCAGATTGCCAGTGGCGATGCAAAAGAAAATGCCAACTTTCAGCCTCTTGGGAGCGATTGGCGCGAGCGGGTAAAGCGAAGGAGAGCTCAATCATCAAGTGAAGTTACTCAATCCCCTGTTGAAGCACCCACAGATGGAAACCAGCAGCCTGACTTGGCAGAAATCTCAAAAGATCTCCCCTCAGGATGGCAGGCATATTGGGATGAGTCGTCGAAACAGGTGTATTATGGTAATGTTAACACCTCAGAAACGTCGTGGATGAAACCAAGCAAGTGA 2832 43.33 MGKRRERRLAALSNVGRRVKLDLFAEPSGDLDGSDGHEEVGGDIDTRQTIKLPKSASSSGHQTQNPLLLLEQYSDDDIDGDLNKNSDQDGQDDLLPERNDEVAAVATEGCENMDTNVGEDLIAEKTVQEESERGSVEISENMESKDEAKTNTNSLGCLSKESDLFQTSVPTTSNVQVSGDVISGWRIVMHEESHNYYYWNVETGETSWEVPDVVLTQAQPTQSTTDIKTSPTQFPENVTVFKQESGLTNGGKLGAFSAESTGYNNSVPVTASQGSEVDQSYAALSTCSNDVNITKAASEIYVDYTVTNEELKSSGLDLPSHLLTRSASLFEKLKSLQKSGGHEWTSKYILETQVRLSDFMSLMPYKTSLVPFWEHSARKLKQIEEDVNKEIYQSAAVSSQLDEAKTTDSPKIVRVETFQERSNVESEVERVANSGVSALEHSHLPTDSASLKLQEDQCHVTIIANGENVSPSKAIDQLGNSTVVTEHASEVATDEMASKSGVHSVEDVDMEVDMEVEDASSAGNLMMAGTSDSCATFLEQPLQPDPPVHPNLSSGYAYMLSEDGSIAPPPPPPDEEWIPPPPPDNEDVSPPPPDEPAEPLYPMAPSYTQLGQPLCYTEPYRVSYPDSSIKYYAHPAPEVVPTADFYGHPEACNVVLAQAPFYYEPVPNSHTDSASIVVNGVLPEGYGILQNATATLPIFSTTEPSQLHVDSSSASLHPSSSVQYGSSDAANMNNASAADEIDKRRGETTTASFRASTSGSPTNDVLPTNKAVTDSSSVANASAVSKVQPKALRSKKRTVTVAPSLRSNKKVSSLLDKWKAAKEELEDEEEPENAYEILERKREREIKEWHAQQIASGDAKENANFQPLGSDWRERVKRRRAQSSSEVTQSPVEAPTDGNQQPDLAEISKDLPSGWQAYWDESSKQVYYGNVNTSETSWMKPSK 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9891492 9899239 + MELO3C024969.2.1 Cme01g00868 317844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00868 943 MobiDBLite consensus disorder prediction 883 903 - -
Cme01g00868 943 MobiDBLite consensus disorder prediction 127 147 - -
Cme01g00868 943 MobiDBLite consensus disorder prediction 709 795 - -
Cme01g00868 943 Pfam WW domain 183 211 IPR001202 GO:0005515
Cme01g00868 943 Pfam WW domain 911 941 IPR001202 GO:0005515
Cme01g00868 943 CDD WW 183 212 IPR001202 GO:0005515
Cme01g00868 943 MobiDBLite consensus disorder prediction 853 909 - -
Cme01g00868 943 ProSitePatterns WW/rsp5/WWP domain signature. 185 211 IPR001202 GO:0005515
Cme01g00868 943 MobiDBLite consensus disorder prediction 50 70 - -
Cme01g00868 943 Gene3D - 905 943 - -
Cme01g00868 943 PANTHER OS06G0298400 PROTEIN 1 943 - -
Cme01g00868 943 MobiDBLite consensus disorder prediction 77 95 - -
Cme01g00868 943 MobiDBLite consensus disorder prediction 31 45 - -
Cme01g00868 943 MobiDBLite consensus disorder prediction 561 599 - -
Cme01g00868 943 SMART ww_5 910 943 IPR001202 GO:0005515
Cme01g00868 943 SMART ww_5 180 213 IPR001202 GO:0005515
Cme01g00868 943 MobiDBLite consensus disorder prediction 709 734 - -
Cme01g00868 943 MobiDBLite consensus disorder prediction 750 784 - -
Cme01g00868 943 SUPERFAMILY WW domain 908 941 IPR036020 GO:0005515
Cme01g00868 943 SUPERFAMILY WW domain 172 211 IPR036020 GO:0005515
Cme01g00868 943 MobiDBLite consensus disorder prediction 25 95 - -
Cme01g00868 943 Coils Coil 808 828 - -
Cme01g00868 943 MobiDBLite consensus disorder prediction 565 599 - -
Cme01g00868 943 Gene3D - 180 222 - -
Cme01g00868 943 ProSiteProfiles WW/rsp5/WWP domain profile. 909 943 IPR001202 GO:0005515
Cme01g00868 943 ProSitePatterns WW/rsp5/WWP domain signature. 915 941 IPR001202 GO:0005515
Cme01g00868 943 ProSiteProfiles WW/rsp5/WWP domain profile. 179 213 IPR001202 GO:0005515
Cme01g00868 943 MobiDBLite consensus disorder prediction 127 154 - -
Cme01g00868 943 CDD WW 912 941 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00868 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1621.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00868 Cme_Chr01 FPKM 32.112698 30.857693 59.075764 55.256302 51.801105 46.50349 56.086655 65.837563 60.341808 68.012657