Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00870 ATGAGTGAATTCAGGTCCAAATTCTTGGACGTTTACTCATTGTTGAAATCCGAGCTCCTTCACGACCCTGCTTTCGAGTTCACTGACGATTCTCGCCAATGGGTCGAGCGGATGCTGGATTACAATGTACCTGGAGGAAAGTTGAACAGAGGTCTCTCTGTCATTGATAGCTACAAGTTACTAAAACAGGGGGAAAAGCTGACTGAAGATGAAGTGTTTCTGGCTTCTGCACTTGGTTGGTGCATTGAATGGTTTCAAGCATATTTTCTTGTTCTTGACGACATCATGGACAAGGCTGTTACACGACGTGGACAACCTTGCTGGTTCAGGGTACCAAAGGTTGGAATGGTTGCCGTAAATGATGGCATAATGCTACGGAACCATATCTCGAGAATCCTCAAGAATCATTTCAAAGAAAAGCCTTATTATGTGGATCTTATGGAATTGTTTAATGAGGTAGAGTTTCAAACAGCCTCAGGACAGATGATAGATTTAATTACCACACTCGAAGGAGAGAAAGATCTGTCAAAGTACTCATTACCTCTTCACCATCGCATTGTTCAGTACAAAACTGCATACTACTCGTTCTACCTCCCGGTTGCATGTGCATTGCTAATGGCAGGTGAAAATTTGGAGAATCATAATGATGTCAAGAACATTCTCATTGATATGGGAACCTATTTTCAAGTGCAGGATGATTATCTGGATTGTTTTGGTCTTCCTGATGTGATAGGGAAGGTTGGAACAGATATTGAAGACTTCAAGTGCTCTTGGCTTGTTGTGAAAGCGGTAGAACTAAGTGATGAAAAACAGAAGACTTTGCTACATGAAAATTATGGGAAAGCAGATAAGGATTGTGTTGCCAAAGTGAAAGAGTTATATAAAGATCTCAATCTTGAGGGCGTATTTTCCGAGTACGAGAGAAAAAGCTACAAGAAGCTTCTAAAATCCATAGAAGTTCATCCAAGTGATGCAGTACAAGCAGTATTGAAATCTTTCCTTGCAAAGATTTACAAAAGGCAGAAATAG 1029 40.52 MSEFRSKFLDVYSLLKSELLHDPAFEFTDDSRQWVERMLDYNVPGGKLNRGLSVIDSYKLLKQGEKLTEDEVFLASALGWCIEWFQAYFLVLDDIMDKAVTRRGQPCWFRVPKVGMVAVNDGIMLRNHISRILKNHFKEKPYYVDLMELFNEVEFQTASGQMIDLITTLEGEKDLSKYSLPLHHRIVQYKTAYYSFYLPVACALLMAGENLENHNDVKNILIDMGTYFQVQDDYLDCFGLPDVIGKVGTDIEDFKCSWLVVKAVELSDEKQKTLLHENYGKADKDCVAKVKELYKDLNLEGVFSEYERKSYKKLLKSIEVHPSDAVQAVLKSFLAKIYKRQK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9911893 9916215 - MELO3C024967.2.1 Cme01g00870 317846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00870 342 Gene3D Farnesyl Diphosphate Synthase 1 341 IPR008949 -
Cme01g00870 342 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 1 342 IPR039702 GO:0008299|GO:0016765
Cme01g00870 342 Pfam Polyprenyl synthetase 33 296 IPR000092 GO:0008299
Cme01g00870 342 SFLD Polyprenyl Transferase Like 22 340 - -
Cme01g00870 342 CDD Trans_IPPS_HT 30 340 IPR000092 GO:0008299
Cme01g00870 342 SUPERFAMILY Terpenoid synthases 6 341 IPR008949 -
Cme01g00870 342 ProSitePatterns Polyprenyl synthases signature 2. 224 236 IPR033749 -
Cme01g00870 342 SFLD Isoprenoid Synthase Type I 22 340 - -
Cme01g00870 342 ProSitePatterns Polyprenyl synthases signature 1. 90 104 IPR033749 -
Cme01g00870 342 PANTHER FARNESYL PYROPHOSPHATE SYNTHASE 1-LIKE 1 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00870 K00787 FDPS; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] - csv:101217388 672.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00870 Cme-Chr1:9911893 Cme03g00910 Cme-Chr3:17415452 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g715 . . . . Bpe09g00111 . Bma10g00600 Bma13g01131 . . Cma01g01062 . Car01g00936 . Sed11g1171 . Cpe02g00835 Bhi09g01801 Tan01g3213 Cmetu03g0372 . . Mch11g1302 . . . . . . . . . . . . . . . . . . Bda05g00674 Bda12g00981 . Bpe03g00747 . . . Cmo01g01103 . . . . . . . . . . . . . . Cla09g02095 Cam09g2181 Cec09g2248 . . . . . . Chy01g01122 Cme01g00870
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002219 2 4 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 2 1 2 3 5 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00870 Cme_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.163435 0.0