Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00873 ATGATTCATTCTGGTTTCTTCCTTTCGGGACCATCATTTAATTCTGATGCTACTACGTCTTTCATATCAATTTCGGTGTCTGGAGAAGATGGCGCTATGGCTGATGATATCAGAAACGAAGCATCTGATTCTGTCCCTCCTTCCTTTTGGGTTAAAATGGCGATGAAAATATCTAGAGCTAGATGGTTTATATTTTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCTAATCCTTTCAATTCGGGTTTGTGGATGGCGATGGAACTTGTAGCTCTGTTGTTTCAGCTAATTATCTCAGTGTTTACTCTTGCCATTTCACAGGCTGAAAAGCCAGTTTGGCCTATGAGGTTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTATGGCCGCCATCGGTATCATTATCTAATGCAGGGAAATGATAACCGTCTTTCAGATATTGAACATGAACAGCAGAGGAGCAATGAATCATCAAGGTATTCACATTTGATGAACAGATGCCGCACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGAAATCTTTGGGTCTTCGATTCTCGCTTAGCCTCATTCCAGAGAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTACAGGGTATAACATTAACATGGGATCATCCGAAAAAGGGGCATCAGATGATCAAATTTCCCAGCTACCTTGCTGGAGATACAAAGCGGTCGAAGCCAACATCAACCCCAGAAGTCAACCTGACAATAGCAATACAGGACTTCTAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAATTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTGTAAGCAACAACTTCAAAGATAG 1044 41.95 MIHSGFFLSGPSFNSDATTSFISISVSGEDGAMADDIRNEASDSVPPSFWVKMAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGLWMAMELVALLFQLIISVFTLAISQAEKPVWPMRLWIGGYDLGCVLSLLLLYGRHRYHYLMQGNDNRLSDIEHEQQRSNESSRYSHLMNRCRTSLDLFFAIWFVMGNLWVFDSRLASFQRAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSLTGYNINMGSSEKGASDDQISQLPCWRYKAVEANINPRSQPDNSNTGLLKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLCKQQLQR 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9955188 9958149 - MELO3C024964.2.1 Cme01g00873 317849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00873 347 Pfam Ring finger domain 300 342 IPR001841 -
Cme01g00873 347 CDD RING-H2_RNF111_like 299 342 - -
Cme01g00873 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 346 IPR013083 -
Cme01g00873 347 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 28 346 - -
Cme01g00873 347 SMART ring_2 301 341 IPR001841 -
Cme01g00873 347 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 28 346 - -
Cme01g00873 347 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Cme01g00873 347 SUPERFAMILY RING/U-box 294 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00873 Cme-Chr1:9955188 Cme03g01669 Cme-Chr3:25438904 6.90E-58 dispersed
Cme01g00872 Cme-Chr1:9950135 Cme01g00873 Cme-Chr1:9955188 1.13E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00873 - - csv:101217150 664.84