Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00884 ATGGCTGCCACCAAGTTTAACAAGAAGAAGAGTGTGAAACGGGACGACCCTCCATCGAAAAGGAAGAAGAAGGACGAGCTTTTCACTCCTAAGCGTTCTAAGGAGGAAGAGGATGATTCTGACCTTTCTGATGCTCTGGATGAGGAAGAAGTAGATAATGGACTGATTGATAGTGATGAAGAAGGATCTGGGTCTGGTTCTGAAGATTCTTCGGATGGTGATGACCCTTTGGCTCATGATTTTCTCCAAGGAAGTGACGAAGATGAAGAGAATGATTCAGGCTCGGTTTCAAGTTCTGATTCTGATGAAACTGACATCGAAGACAAGTCGAGAATCATCGATGAGAAAAGGGCGAGGGAAGAAAAGGATGCCGCTGATGAAATGCAGCTCAATATTAAAGATGAGTCCGATGAGTTCAGATTACCGACCAAGGAGGAACTTGAAGAAGAGTCACTTAGACCTCCTGACCTTTCAAATTTACAAAGGCGGATAAGAGAGATTGTTCGAGTTCTTTCAAATTTCAAGGCTTTGAGGCAAGAGGGGGCAACCCGCAAGGACTATGTTGAACAACTTAAGAAAGATATTGGCTCATACTATGGGTATAATGAGTTTCTTATTGGGGTGCTGGTTGAGATGTTTCCAGTAGTTGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCTAGACCAATATGTTTGCGGACTAACACTTTAAAGACAAGAAGGCGAGATTTGGCTGATGTTCTGATTAACAGAGGTGTGAACTTAGATCCTTTGAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTTCCAATTGGAGCGACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTGCCTGTGATGGCCCTTGCTCCTCAAGAAAAAGAACGAATTGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCGGCACTCATGAAAAATAGTGGGATAATATTTGCAAATGAAATTAAAGCACAAAGATTGAAGTCACTTACTGCAAATTTACATCGGATGGGAGTGACAAATACTGTTGTATGCAATTATGATGGGAAAGAGCTCCCAAAAGTATTGGGCATGAATACAGCTGATAGAGTTCTATTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCCAAGGATGAATCTGTTAAAACCTCAAAAAGCTTAGAGGAAATCCAGAAGTGCGCTGAGTTGCAGAAGCAACTTATACTCGCTGCAATTGACATGGTTGATTCAAATTCAAAATCTGGGGGATATGTTGTTTACTCCACATGCTCCATAATGGTTGATGAGAATGAAGCAATTGTTGACTATGCACTTAGAAAGAGGGACGTGAAGCTTGTGCCATGTGGCCTTGATTTTGGACGTCCTGGGTTTATCCGGTTCAGGGAAAAACGTTTCCACCCATCTTTAGAAAAGACAAGACGTTTCTACCCTCATGTACACAACATGGATGGTTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAACAAGATTCCATCTGCAAAATCTTCAGAATCATTGGACGAGGTTGTGGAAGAAGATAATGACACAAAGAAAGGTGGAAATGAGAAGAACGACGGTGAATGTCTTCACCCGCAATTAAATGACGGTGAAAAGGGGAAGAAGGGTTCACAAAATCACGCGGTTGGCAATGGCAAAGAATCCAAGCCCTCCGTGGAGCGGAGGCAGAAGAGAAAATTTCCTTCAAGAGAGGAAATTTCAAGAGCTAGGGAGGAAAAACGACAAGCTTTGAGGGTAAAGAAACATGGGAGCAAGAAAGGGTAA 1833 42.28 MAATKFNKKKSVKRDDPPSKRKKKDELFTPKRSKEEEDDSDLSDALDEEEVDNGLIDSDEEGSGSGSEDSSDGDDPLAHDFLQGSDEDEENDSGSVSSSDSDETDIEDKSRIIDEKRAREEKDAADEMQLNIKDESDEFRLPTKEELEEESLRPPDLSNLQRRIREIVRVLSNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEIKAQRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGMNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDSNSKSGGYVVYSTCSIMVDENEAIVDYALRKRDVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPSAKSSESLDEVVEEDNDTKKGGNEKNDGECLHPQLNDGEKGKKGSQNHAVGNGKESKPSVERRQKRKFPSREEISRAREEKRQALRVKKHGSKKG 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10124125 10129405 + MELO3C024955.2.1 Cme01g00884 317860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00884 610 MobiDBLite consensus disorder prediction 8 39 - -
Cme01g00884 610 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 184 204 IPR023273 GO:0008168
Cme01g00884 610 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 217 229 IPR023273 GO:0008168
Cme01g00884 610 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 240 253 IPR023273 GO:0008168
Cme01g00884 610 Coils Coil 118 138 - -
Cme01g00884 610 MobiDBLite consensus disorder prediction 40 68 - -
Cme01g00884 610 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 36 555 IPR023267 GO:0001510
Cme01g00884 610 MobiDBLite consensus disorder prediction 102 154 - -
Cme01g00884 610 PANTHER BNACNNG49010D PROTEIN 36 555 - -
Cme01g00884 610 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 217 294 IPR031341 -
Cme01g00884 610 Pfam 16S rRNA methyltransferase RsmB/F 298 508 IPR001678 GO:0008168
Cme01g00884 610 Gene3D Sun protein; domain 3 187 294 - -
Cme01g00884 610 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 221 510 IPR001678 GO:0008168
Cme01g00884 610 PRINTS RNA (C5-cytosine) methyltransferase signature 281 295 IPR023267 GO:0001510
Cme01g00884 610 PRINTS RNA (C5-cytosine) methyltransferase signature 310 320 IPR023267 GO:0001510
Cme01g00884 610 PRINTS RNA (C5-cytosine) methyltransferase signature 378 390 IPR023267 GO:0001510
Cme01g00884 610 PRINTS RNA (C5-cytosine) methyltransferase signature 432 448 IPR023267 GO:0001510
Cme01g00884 610 PRINTS RNA (C5-cytosine) methyltransferase signature 492 509 IPR023267 GO:0001510
Cme01g00884 610 MobiDBLite consensus disorder prediction 522 559 - -
Cme01g00884 610 MobiDBLite consensus disorder prediction 1 154 - -
Cme01g00884 610 MobiDBLite consensus disorder prediction 570 601 - -
Cme01g00884 610 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 233 509 IPR011023 GO:0003723|GO:0006396|GO:0008757
Cme01g00884 610 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 195 509 IPR029063 -
Cme01g00884 610 MobiDBLite consensus disorder prediction 515 610 - -
Cme01g00884 610 Gene3D Vaccinia Virus protein VP39 297 605 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00884 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 1087.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00884 Cme-Chr1:10124125 Cme08g00752 Cme-Chr8:5038233 9.77E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00884 Cme_Chr01 FPKM 70.869789 91.036316 81.286789 77.420952 91.967445 71.348289 97.562592 14.368568 13.294785 20.191109