Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00886 ATGTCTAGCAGCAGAGACAGAGACGACCCTCTTTCTTTCGCCCCCACAAACCCATCTTCTTCTTCTTCCCCTGTCTCCGTTTCTGACCCTCGTGATAGTTTTCTCTCTGACCCTACTACCCACATCGGAAGTGCCTCCAGTAGCTTCCAGAATGAGGGTCTTCTCTCCGATTTCAGTCCCAACATCAGCGATGCCGAGTTTGGATTCTCTCGTCCCGAGTTCCGCCAGACCCCACTTGTTGGGACTGTTGATTTCTATGAACGTCATGTGTTTCTTTGTTACAAAAATCCCCAGGTCTGGCCTCCTAGGATTGAGGCTGCTGAGTTCGATCGCCTCCCTAGGCTGCTATCTGCGGCTGTAATGTCGAGGAAGGCCGATATGAAGAAAGAAACTCGCTTAACCATATGTGAGGGGCATGATGGAACGGAGACATCAAATGGGGATGTTTTAATCTTCCCGGACATGATAAGATATAGGAGGTTGACCCATTTTGATGTTGACACATTTGTTGAAGAAGTGCTTGTGAAGAACAGCGAGTGGCAGCCTGGATCTCCTGAAGCACTGAAGGGTTCATATGTTTTCGTATGTTGTCATGGGTCCCGAGATCGTCGGTGTGGCGTTTGTGGTCCTACCTTGGTCAGTCGGTTCCGCGATGAGATAAAATTTCTAGGTCTTCAAAATGTATCTGTTAGCCCATGCTCGCATATTGGAGGCCACAAATATGCAGGAAATGTGATTATATATGGATCAAATGCCAATGGAGAAGTCACTGGGCATTGGTATGGATATGTTGCCCCCGAAGATGTATTTTTATTGCTTCAGCAGCATATCGTGAAAGGGAAGATTGTAGATGAACTTTGGAGGGGCCAGATGGGTTTATCAGAGGAAGAACAGATGCTAAGCCTTGAACTGAGACTTCGTGCAATCAGTGGGACTAATGGCCACAAAAGCAAGGAAGAGCTGGCACAAATCGAGACCAACGATTCAAACTCTGATCCCTATAGATCTCGGGCTGAGGTTGCAGCCTGCTGTCAAGGAGATGGAGATGGTTATTCCTCTTGCTGTCAGAATCCAAAACTATCAAGAACAGTAATTGATTCAGATACAGACAACATTTCTCCAAATGTTGTTACTGCCAAGGGCAACAGAAAACTAACTTCACGAAGCAATAGCAGCAAATCATTTTCCCGTAAGGTTTGCGCAATGCCAACATGGCTCGAGAGCTGGGAGCGTGAAGACACATATGCCGTTGCTGCTGTTATCTGTGCTGCTGTTTCAGTTGCCTTCGCTTATCGGTGCTACAAGCAGCTGTAA 1314 46.96 MSSSRDRDDPLSFAPTNPSSSSSPVSVSDPRDSFLSDPTTHIGSASSSFQNEGLLSDFSPNISDAEFGFSRPEFRQTPLVGTVDFYERHVFLCYKNPQVWPPRIEAAEFDRLPRLLSAAVMSRKADMKKETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEWQPGSPEALKGSYVFVCCHGSRDRRCGVCGPTLVSRFRDEIKFLGLQNVSVSPCSHIGGHKYAGNVIIYGSNANGEVTGHWYGYVAPEDVFLLLQQHIVKGKIVDELWRGQMGLSEEEQMLSLELRLRAISGTNGHKSKEELAQIETNDSNSDPYRSRAEVAACCQGDGDGYSSCCQNPKLSRTVIDSDTDNISPNVVTAKGNRKLTSRSNSSKSFSRKVCAMPTWLESWEREDTYAVAAVICAAVSVAFAYRCYKQL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10179209 10182305 + MELO3C024953.2.1 Cme01g00886 317862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00886 437 PANTHER SUCRASE-LIKE PROTEIN 64 436 - -
Cme01g00886 437 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 64 436 IPR009737 -
Cme01g00886 437 MobiDBLite consensus disorder prediction 1 47 - -
Cme01g00886 437 Pfam Sucrase/ferredoxin-like 79 289 IPR009737 -
Cme01g00886 437 CDD TRX_Fd_Sucrase 190 291 IPR009737 -
Cme01g00886 437 SUPERFAMILY Thioredoxin-like 192 293 IPR036249 -
Cme01g00886 437 Gene3D Glutaredoxin 86 182 - -
Cme01g00886 437 Gene3D Glutaredoxin 190 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00886 - - - csv:101211536 845.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00886 Cme-Chr1:10179209 Cme04g01835 Cme-Chr4:26096419 4.15E-34 dispersed
Cme01g00886 Cme-Chr1:10179209 Cme09g00429 Cme-Chr9:4102798 1.70E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g688 . . . . Bpe09g00118 . . Bma13g01123 . . Cma01g01068 Cma09g01019 Car01g00944 Car09g00923 Sed04g3640 Cpe06g00827 Cpe02g00830 Bhi09g01790 Tan01g3206 Cmetu01g1047 . . Mch11g1291 . . . . . . . . Cone6ag0004 Cone9ag0007 . . . . . . . Blo10g00873 . Bda12g00973 . . . . . Cmo01g01110 Cmo09g01022 . . . . . . . . . . . . . Cla09g02087 Cam09g2174 Cec09g2240 . . . . . . Chy01g01131 Cme01g00886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006682 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 3 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00886 Cme_Chr01 FPKM 0.0 0.273354 34.540283 36.886875 0.90328 0.41212 0.903737 1551.664673 1651.047119 1421.030518